Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s41.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4772.19 49583.21 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4365.92 45362.06 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2420.79 25152.09 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2298.84 23885.02 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd4 ENSMUSG00000064363 2294.80 23843.05 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2231.47 23185.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1393.99 14483.60 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1317.86 13692.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 904.18 9394.46 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Rnr2 ENSMUSG00000064339 897.44 9324.43 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. mt-Co3 ENSMUSG00000064358 817.26 8491.36 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Actb ENSMUSG00000029580 786.27 8169.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Mdk ENSMUSG00000027239 765.38 7952.32 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Nd2 ENSMUSG00000064345 733.72 7623.38 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Eef1a1 ENSMUSG00000037742 625.92 6503.33 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 576.06 5985.28 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 367.20 3815.22 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 353.72 3675.16 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Hbb-y ENSMUSG00000052187 328.79 3416.14 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. mt-Nd5 ENSMUSG00000064367 311.95 3241.17 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Npm1 ENSMUSG00000057113 294.43 3059.14 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Cfl1 ENSMUSG00000056201 281.63 2926.15 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Tuba1b ENSMUSG00000023004 278.26 2891.13 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Tubb5 ENSMUSG00000001525 270.85 2814.14 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Hmga2 ENSMUSG00000056758 247.94 2576.10 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
26. Nedd4 ENSMUSG00000032216 241.20 2506.08 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Gm10800 ENSMUSG00000075014 232.44 2415.06 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Pkm ENSMUSG00000032294 228.40 2373.08 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Ubb ENSMUSG00000019505 224.36 2331.11 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Tpt1 ENSMUSG00000060126 216.95 2254.12 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Rpl4 ENSMUSG00000032399 210.88 2191.05 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Hba-x ENSMUSG00000055609 197.41 2051.10 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
33. Rps20 ENSMUSG00000028234 185.28 1925.07 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
34. Acta2 ENSMUSG00000035783 178.54 1855.04 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
35. Cdkn1c ENSMUSG00000037664 177.87 1848.08 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Rps26 ENSMUSG00000025362 175.85 1827.09 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Chchd2 ENSMUSG00000070493 171.81 1785.11 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Hba-a1 ENSMUSG00000069919 164.40 1708.12 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
39. Pbx1 ENSMUSG00000052534 164.40 1708.12 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
40. Eif4g2 ENSMUSG00000005610 161.70 1680.07 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Myl6 ENSMUSG00000090841 159.01 1652.12 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Rpl23 ENSMUSG00000071415 159.01 1652.12 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
43. Eif5a ENSMUSG00000078812 156.31 1624.07 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Hsp90ab1 ENSMUSG00000023944 154.29 1603.08 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
45. Eef1b2 ENSMUSG00000025967 151.59 1575.03 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Hnrnpc ENSMUSG00000060373 134.08 1393.10 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Ran ENSMUSG00000029430 128.69 1337.09 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
48. Rpl18a ENSMUSG00000045128 127.34 1323.07 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
49. Rps5 ENSMUSG00000012848 126.67 1316.11 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
50. Rps3a1 ENSMUSG00000028081 125.32 1302.08 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
51. Hsp90aa1 ENSMUSG00000021270 124.64 1295.01 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Fkbp1a ENSMUSG00000032966 121.28 1260.10 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
53. Rps4x ENSMUSG00000031320 121.28 1260.10 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Set ENSMUSG00000054766 119.93 1246.08 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
55. mt-Rnr1 ENSMUSG00000064337 119.93 1246.08 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
56. Banf1 ENSMUSG00000024844 119.25 1239.01 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Rplp1 ENSMUSG00000007892 117.23 1218.02 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Grb10 ENSMUSG00000020176 115.89 1204.10 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
59. Rpl32 ENSMUSG00000057841 113.19 1176.05 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
60. Ywhab ENSMUSG00000018326 111.84 1162.02 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Atp5g3 ENSMUSG00000018770 111.17 1155.06 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
62. Rpl37 ENSMUSG00000041841 111.17 1155.06 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
63. Col3a1 ENSMUSG00000026043 110.50 1148.10 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
64. Paics ENSMUSG00000029247 109.15 1134.07 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Hnrnpa2b1 ENSMUSG00000004980 105.11 1092.10 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
66. Cdk4 ENSMUSG00000006728 104.43 1085.03 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Gm5805 ENSMUSG00000061848 103.76 1078.07 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Peg3 ENSMUSG00000002265 101.06 1050.02 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
69. Ndufa12 ENSMUSG00000020022 100.39 1043.06 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
70. Tmsb4x ENSMUSG00000049775 99.72 1036.09 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
71. H3f3b ENSMUSG00000016559 98.37 1022.07 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
72. Rpl39-ps ENSMUSG00000036305 98.37 1022.07 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
73. Actc1 ENSMUSG00000068614 97.69 1015.00 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
74. Ago2 ENSMUSG00000036698 97.02 1008.04 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
75. Ybx1 ENSMUSG00000028639 96.35 1001.08 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
76. Gm14303 ENSMUSG00000081344 95.67 994.01 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
77. Gm14586 ENSMUSG00000083621 95.00 987.05 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
78. Cox8a ENSMUSG00000035885 91.63 952.04 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
79. Rrm2 ENSMUSG00000020649 91.63 952.04 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
80. Ddx5 ENSMUSG00000020719 90.96 945.08 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
81. Crabp1 ENSMUSG00000032291 90.28 938.01 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
82. Hmgn1 ENSMUSG00000040681 90.28 938.01 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
83. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 90.28 938.01 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
84. Rpl41 ENSMUSG00000093674 88.94 924.09 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
85. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 88.94 924.09 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
86. Srsf3 ENSMUSG00000071172 88.94 924.09 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
87. Tmsb10 ENSMUSG00000079523 88.94 924.09 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
88. Meg3 ENSMUSG00000021268 88.26 917.02 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
89. Ngfrap1 88.26 917.02 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
90. Sub1 ENSMUSG00000022205 88.26 917.02 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
91. Tecr ENSMUSG00000031708 88.26 917.02 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
92. Col1a1 ENSMUSG00000001506 86.24 896.04 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
93. Wbp5 86.24 896.04 WW domain binding protein 5
94. Pcbp1 ENSMUSG00000051695 85.57 889.08 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
95. U2af2 ENSMUSG00000030435 85.57 889.08 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
96. Ldha ENSMUSG00000063229 84.89 882.01 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
97. Morf4l1 ENSMUSG00000062270 82.87 861.02 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Caprin1 ENSMUSG00000027184 81.52 847.00 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
99. Fkbp4 ENSMUSG00000030357 81.52 847.00 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
100. Anp32b ENSMUSG00000028333 80.18 833.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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