Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_3, section s40.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4042.93 42002.91 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4032.05 41889.88 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2725.31 28313.86 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2475.77 25721.33 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2177.04 22617.76 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2130.96 22139.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. H19 ENSMUSG00000000031 1564.05 16249.27 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1465.68 15227.28 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd3 ENSMUSG00000064360 835.61 8681.34 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Mdk ENSMUSG00000027239 795.23 8261.82 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Co3 ENSMUSG00000064358 794.71 8256.42 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 754.33 7836.90 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Igf2 ENSMUSG00000048583 731.55 7600.24 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Actb ENSMUSG00000029580 679.26 7056.99 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Nd2 ENSMUSG00000064345 676.15 7024.68 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. mt-Rnr2 ENSMUSG00000064339 417.29 4335.32 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Gm13340 ENSMUSG00000083563 407.97 4238.49 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 352.57 3662.93 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Hbb-y ENSMUSG00000052187 345.32 3587.61 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Cfl1 ENSMUSG00000056201 344.81 3582.31 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Tuba1b ENSMUSG00000023004 300.80 3125.08 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. mt-Nd5 ENSMUSG00000064367 287.86 2990.64 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Npm1 ENSMUSG00000057113 258.86 2689.36 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Hmga2 ENSMUSG00000056758 248.51 2581.83 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Ubb ENSMUSG00000019505 247.47 2571.02 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
26. Hba-a1 ENSMUSG00000069919 242.30 2517.31 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Nedd4 ENSMUSG00000032216 239.19 2485.00 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Tubb5 ENSMUSG00000001525 232.46 2415.08 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Eif4g2 ENSMUSG00000005610 218.48 2269.84 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Hba-x ENSMUSG00000055609 210.71 2189.11 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
31. Tpt1 ENSMUSG00000060126 195.70 2033.17 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Pkm ENSMUSG00000032294 183.79 1909.44 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Rpl4 ENSMUSG00000032399 177.06 1839.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Cdkn1c ENSMUSG00000037664 168.26 1748.09 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
35. Rpl23 ENSMUSG00000071415 166.71 1731.99 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Rps26 ENSMUSG00000025362 165.15 1715.78 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Rps20 ENSMUSG00000028234 164.64 1710.48 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Eef1b2 ENSMUSG00000025967 161.01 1672.77 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Hsp90ab1 ENSMUSG00000023944 158.94 1651.26 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Chchd2 ENSMUSG00000070493 158.42 1645.86 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Col3a1 ENSMUSG00000026043 146.52 1522.23 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
42. Rrm2 ENSMUSG00000020649 146.00 1516.83 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Banf1 ENSMUSG00000024844 144.96 1506.02 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Atp5g3 ENSMUSG00000018770 144.45 1500.72 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Hsp90aa1 ENSMUSG00000021270 142.37 1479.11 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
46. Fkbp1a ENSMUSG00000032966 140.82 1463.01 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Acta2 ENSMUSG00000035783 140.30 1457.61 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
48. Pbx1 ENSMUSG00000052534 130.98 1360.78 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
49. Eif5a ENSMUSG00000078812 129.43 1344.68 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
50. Paics ENSMUSG00000029247 129.43 1344.68 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
51. Crabp1 ENSMUSG00000032291 128.91 1339.28 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
52. Gm10800 ENSMUSG00000075014 127.36 1323.17 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
53. Hnrnpc ENSMUSG00000060373 125.29 1301.67 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Tmsb10 ENSMUSG00000079523 120.63 1253.25 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
55. Ywhab ENSMUSG00000018326 117.52 1220.94 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Grb10 ENSMUSG00000020176 117.01 1215.64 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
57. Ran ENSMUSG00000029430 114.94 1194.14 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Cdk4 ENSMUSG00000006728 111.31 1156.42 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
59. Rpl18a ENSMUSG00000045128 110.28 1145.72 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. Myl6 ENSMUSG00000090841 109.76 1140.32 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
61. Rpl32 ENSMUSG00000057841 109.24 1134.92 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
62. Gm15459 ENSMUSG00000100801 108.20 1124.11 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
63. Rplp1 ENSMUSG00000007892 106.13 1102.61 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
64. Hmgn1 ENSMUSG00000040681 105.62 1097.31 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
65. Kpnb1 ENSMUSG00000001440 105.10 1091.91 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
66. Rpl39-ps ENSMUSG00000036305 104.06 1081.10 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
67. Ywhaq ENSMUSG00000076432 104.06 1081.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
68. Gm5805 ENSMUSG00000061848 103.55 1075.80 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
69. Ndufa12 ENSMUSG00000020022 103.55 1075.80 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
70. Rps4x ENSMUSG00000031320 103.03 1070.40 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Rps5 ENSMUSG00000012848 101.47 1054.19 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Hnrnpa2b1 ENSMUSG00000004980 99.40 1032.69 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. Hnrnph1 ENSMUSG00000007850 99.40 1032.69 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
74. Hba-a2 ENSMUSG00000069917 96.30 1000.48 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
75. Pcbp1 ENSMUSG00000051695 96.30 1000.48 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
76. Tmsb4x ENSMUSG00000049775 95.78 995.08 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
77. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 94.74 984.28 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
78. Gm9844 ENSMUSG00000091955 94.23 978.98 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
79. Gm5963 ENSMUSG00000052192 92.67 962.77 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
80. Set ENSMUSG00000054766 92.67 962.77 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
81. Hbb-bh1 ENSMUSG00000052217 91.64 952.07 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
82. Ywhaz ENSMUSG00000022285 91.12 946.67 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
83. Ywhae ENSMUSG00000020849 90.60 941.26 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Ddx5 ENSMUSG00000020719 90.08 935.86 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
85. Rps3a1 ENSMUSG00000028081 90.08 935.86 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
86. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 90.08 935.86 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
87. mt-Rnr1 ENSMUSG00000064337 89.05 925.16 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
88. Gm14586 ENSMUSG00000083621 88.53 919.76 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. H3f3b ENSMUSG00000016559 88.01 914.36 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
90. Peg3 ENSMUSG00000002265 88.01 914.36 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
91. Rpl8 ENSMUSG00000003970 88.01 914.36 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
92. Ago2 ENSMUSG00000036698 86.98 903.65 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
93. Morf4l2 ENSMUSG00000031422 86.98 903.65 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
94. Rps9 ENSMUSG00000006333 86.46 898.25 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
95. Meg3 ENSMUSG00000021268 84.39 876.75 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
96. Rpl37 ENSMUSG00000041841 83.87 871.34 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
97. Tecr ENSMUSG00000031708 83.35 865.94 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
98. Cox8a ENSMUSG00000035885 82.32 855.24 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
99. Pabpc1 ENSMUSG00000022283 82.32 855.24 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
100. Trim28 ENSMUSG00000005566 82.32 855.24 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA