Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_3, section s39.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4345.51 45146.85 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3780.08 39272.42 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2200.41 22860.74 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2061.14 21413.82 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 1999.86 20777.17 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1981.56 20587.04 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1262.55 13117.02 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1117.31 11608.08 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Mdk ENSMUSG00000027239 937.86 9743.72 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. Actb ENSMUSG00000029580 934.68 9710.68 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 698.32 7255.06 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Igf2 ENSMUSG00000048583 683.20 7097.98 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Eef1a1 ENSMUSG00000037742 644.21 6692.90 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Co3 ENSMUSG00000064358 624.31 6486.15 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. mt-Nd2 ENSMUSG00000064345 613.57 6374.57 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. mt-Rnr2 ENSMUSG00000064339 511.70 5316.21 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Gm13340 ENSMUSG00000083563 350.55 3641.97 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 312.75 3249.26 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Nd5 ENSMUSG00000064367 291.27 3026.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Tuba1b ENSMUSG00000023004 284.10 2951.60 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Tubb5 ENSMUSG00000001525 266.60 2769.79 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Cfl1 ENSMUSG00000056201 261.02 2711.82 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Hmga2 ENSMUSG00000056758 254.66 2645.74 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Npm1 ENSMUSG00000057113 254.66 2645.74 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Ubb ENSMUSG00000019505 233.97 2430.79 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
26. Nedd4 ENSMUSG00000032216 229.59 2385.28 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Pkm ENSMUSG00000032294 228.00 2368.76 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Cdkn1c ENSMUSG00000037664 227.20 2360.45 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
29. Tpt1 ENSMUSG00000060126 221.23 2298.43 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Hsp90ab1 ENSMUSG00000023944 215.66 2240.56 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Hbb-y ENSMUSG00000052187 211.29 2195.16 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
32. Eif4g2 ENSMUSG00000005610 190.99 1984.25 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Pbx1 ENSMUSG00000052534 181.44 1885.04 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. Rpl4 ENSMUSG00000032399 179.06 1860.31 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Col3a1 ENSMUSG00000026043 174.68 1814.80 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
36. Rrm2 ENSMUSG00000020649 171.89 1785.82 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
37. Rps20 ENSMUSG00000028234 167.52 1740.42 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Crabp1 ENSMUSG00000032291 165.93 1723.90 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
39. Chchd2 ENSMUSG00000070493 163.54 1699.07 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Atp5g3 ENSMUSG00000018770 154.78 1608.06 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Eif5a ENSMUSG00000078812 151.60 1575.02 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Hnrnpc ENSMUSG00000060373 144.84 1504.79 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Set ENSMUSG00000054766 143.25 1488.27 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
44. Myl6 ENSMUSG00000090841 138.47 1438.61 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
45. Fkbp1a ENSMUSG00000032966 136.48 1417.93 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Rpl23 ENSMUSG00000071415 136.48 1417.93 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Banf1 ENSMUSG00000024844 136.08 1413.78 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Grb10 ENSMUSG00000020176 136.08 1413.78 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
49. Hba-x ENSMUSG00000055609 134.89 1401.41 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
50. Rps26 ENSMUSG00000025362 134.09 1393.10 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Pcbp1 ENSMUSG00000051695 132.50 1376.58 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
52. Hmgn1 ENSMUSG00000040681 130.51 1355.91 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
53. Hsp90aa1 ENSMUSG00000021270 129.72 1347.70 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Acta2 ENSMUSG00000035783 128.12 1331.08 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
55. Eef1b2 ENSMUSG00000025967 127.33 1322.87 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Ywhab ENSMUSG00000018326 125.74 1306.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Ran ENSMUSG00000029430 123.35 1281.52 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Trim28 ENSMUSG00000005566 120.96 1256.69 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
59. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 119.37 1240.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
60. Ybx1 ENSMUSG00000028639 117.38 1219.50 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
61. Paics ENSMUSG00000029247 116.59 1211.29 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
62. Hba-a1 ENSMUSG00000069919 110.22 1145.11 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
63. Gm26917 ENSMUSG00000097971 109.42 1136.80 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
64. Ngfrap1 109.03 1132.75 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
65. Tmsb4x ENSMUSG00000049775 108.23 1124.44 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
66. U2af2 ENSMUSG00000030435 107.43 1116.12 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
67. Rps4x ENSMUSG00000031320 105.84 1099.60 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
68. Hnrnpa2b1 ENSMUSG00000004980 104.65 1087.24 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Ago2 ENSMUSG00000036698 104.25 1083.09 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
70. Rps5 ENSMUSG00000012848 103.85 1078.93 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
71. Meg3 ENSMUSG00000021268 103.45 1074.77 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
72. Rps3a1 ENSMUSG00000028081 103.45 1074.77 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
73. Tpm4 ENSMUSG00000031799 103.06 1070.72 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
74. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 100.27 1041.74 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
75. Marcksl1 ENSMUSG00000047945 100.27 1041.74 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
76. Cdk4 ENSMUSG00000006728 99.87 1037.58 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Gm10800 ENSMUSG00000075014 98.68 1025.22 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
78. Rpl18a ENSMUSG00000045128 97.88 1016.91 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
79. Ywhae ENSMUSG00000020849 97.88 1016.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
80. Peg3 ENSMUSG00000002265 94.30 979.71 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
81. Cox8a ENSMUSG00000035885 93.91 975.66 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
82. H3f3b ENSMUSG00000016559 93.11 967.35 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
83. Tmsb10 ENSMUSG00000079523 91.92 954.99 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
84. Fkbp4 ENSMUSG00000030357 91.12 946.67 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
85. Gm5805 ENSMUSG00000061848 91.12 946.67 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
86. Nr2f2 ENSMUSG00000030551 91.12 946.67 nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
87. Pabpc1 ENSMUSG00000022283 90.32 938.36 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
88. Col1a1 ENSMUSG00000001506 89.53 930.15 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
89. Ndufa12 ENSMUSG00000020022 89.13 926.00 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
90. Ddx5 ENSMUSG00000020719 88.33 917.69 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
91. Morf4l2 ENSMUSG00000031422 88.33 917.69 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
92. Srsf3 ENSMUSG00000071172 87.14 905.32 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 86.35 897.12 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
94. Rpl32 ENSMUSG00000057841 86.35 897.12 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
95. Anp32b ENSMUSG00000028333 85.55 888.81 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Eef2 ENSMUSG00000034994 85.15 884.65 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
97. Rps9 ENSMUSG00000006333 84.75 880.49 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Caprin1 ENSMUSG00000027184 83.96 872.29 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
99. Marcks ENSMUSG00000069662 83.96 872.29 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
100. Rpl8 ENSMUSG00000003970 83.96 872.29 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA