Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_3, section s38.

Sample reads: 96,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3783.08 39307.45 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 3593.09 37333.39 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. mt-Atp6 ENSMUSG00000064357 2029.86 21090.92 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1593.23 16554.19 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. H19 ENSMUSG00000000031 1123.26 11671.04 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
6. Mdk ENSMUSG00000027239 1049.93 10909.12 midkine [Source:MGI Symbol;Acc:MGI:96949]
7. Gm13340 ENSMUSG00000083563 919.94 9558.48 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
8. mt-Co3 ENSMUSG00000064358 839.94 8727.25 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
9. mt-Co2 ENSMUSG00000064354 789.95 8207.84 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. Ptma ENSMUSG00000026238 779.95 8103.94 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
11. mt-Nd2 ENSMUSG00000064345 779.95 8103.94 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Co1 ENSMUSG00000064351 729.95 7584.42 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
13. Tuba1b ENSMUSG00000023004 616.63 6406.99 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
14. Pkm ENSMUSG00000032294 599.96 6233.78 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
15. Gm10800 ENSMUSG00000075014 583.29 6060.58 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Rpl4 ENSMUSG00000032399 539.96 5610.36 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
17. Hbb-y ENSMUSG00000052187 486.63 5056.25 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. mt-Rnr2 ENSMUSG00000064339 439.97 4571.43 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
19. mt-Nd3 ENSMUSG00000064360 429.97 4467.53 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
20. Crabp1 ENSMUSG00000032291 423.31 4398.33 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
21. Tubb5 ENSMUSG00000001525 383.31 3982.72 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Igf2 ENSMUSG00000048583 349.98 3636.41 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
23. Cdkn1c ENSMUSG00000037664 333.31 3463.20 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
24. mt-Nd5 ENSMUSG00000064367 333.31 3463.20 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
25. Ubb ENSMUSG00000019505 316.65 3290.10 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
26. Tpt1 ENSMUSG00000060126 313.31 3255.39 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Eef1a1 ENSMUSG00000037742 299.98 3116.89 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
28. Rps20 ENSMUSG00000028234 293.31 3047.59 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
29. Rpl18a ENSMUSG00000045128 279.98 2909.08 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
30. Hmga2 ENSMUSG00000056758 269.98 2805.18 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
31. Gm8292 ENSMUSG00000100215 259.98 2701.28 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
32. Actb ENSMUSG00000029580 243.32 2528.18 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
33. Cfl1 ENSMUSG00000056201 236.65 2458.87 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
34. Npm1 ENSMUSG00000057113 233.32 2424.27 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
35. Chchd2 ENSMUSG00000070493 226.65 2354.97 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Eif4g2 ENSMUSG00000005610 226.65 2354.97 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Myl6 ENSMUSG00000090841 219.99 2285.77 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Gm15459 ENSMUSG00000100801 213.32 2216.47 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
39. Rpl32 ENSMUSG00000057841 193.32 2008.66 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
40. Hbb-bh1 ENSMUSG00000052217 189.99 1974.06 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
41. Rps4x ENSMUSG00000031320 186.65 1939.36 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
42. Eif4h ENSMUSG00000040731 183.32 1904.76 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
43. Ddx39b ENSMUSG00000019432 179.99 1870.16 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
44. Rpl23 ENSMUSG00000071415 179.99 1870.16 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Ywhab ENSMUSG00000018326 179.99 1870.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Hba-x ENSMUSG00000055609 176.65 1835.45 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
47. Hsp90aa1 ENSMUSG00000021270 173.32 1800.85 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Gm14303 ENSMUSG00000081344 169.99 1766.25 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
49. Actc1 ENSMUSG00000068614 166.66 1731.65 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
50. Rps26 ENSMUSG00000025362 166.66 1731.65 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Hnrnpk ENSMUSG00000021546 163.32 1696.95 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
52. Acta2 ENSMUSG00000035783 159.99 1662.35 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
53. Gm9844 ENSMUSG00000091955 159.99 1662.35 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
54. Rpl3-ps1 ENSMUSG00000084349 159.99 1662.35 ribosomal protein L3, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644217]
55. Banf1 ENSMUSG00000024844 156.66 1627.75 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. Gm10073 ENSMUSG00000060019 156.66 1627.75 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
57. Rpl37 ENSMUSG00000041841 156.66 1627.75 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
58. Rps9 ENSMUSG00000006333 156.66 1627.75 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
59. Top2a ENSMUSG00000020914 153.32 1593.05 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
60. Gm12715 ENSMUSG00000059195 146.66 1523.85 predicted gene 12715 [Source:MGI Symbol;Acc:MGI:3650759]
61. Rpsa ENSMUSG00000032518 146.66 1523.85 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
62. Grb10 ENSMUSG00000020176 143.32 1489.14 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
63. Hnrnpc ENSMUSG00000060373 136.66 1419.94 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
64. Hspe1 ENSMUSG00000073676 136.66 1419.94 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
65. Ywhae ENSMUSG00000020849 136.66 1419.94 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
66. Igfbp5 ENSMUSG00000026185 133.32 1385.24 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
67. Jund ENSMUSG00000071076, ENSMUSG00000110974 133.32 1385.24 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
68. Paics ENSMUSG00000029247 133.32 1385.24 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Ran ENSMUSG00000029430 133.32 1385.24 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
70. Adprh ENSMUSG00000002844 123.33 1281.44 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
71. Atp5g3 ENSMUSG00000018770 123.33 1281.44 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
72. Rpl8 ENSMUSG00000003970 119.99 1246.74 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
73. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 116.66 1212.14 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
74. Gm2000 ENSMUSG00000078193 116.66 1212.14 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
75. Gm4617 ENSMUSG00000096544 116.66 1212.14 predicted pseudogene 4617 [Source:MGI Symbol;Acc:MGI:3704225]
76. Rpl14-ps1 ENSMUSG00000046721 116.66 1212.14 ribosomal protein L14, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3710579]
77. Ndufa12 ENSMUSG00000020022 113.33 1177.54 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Scd2 ENSMUSG00000025203 113.33 1177.54 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
79. Trim28 ENSMUSG00000005566 113.33 1177.54 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
80. Uqcrq ENSMUSG00000044894 113.33 1177.54 ubiquinol-cytochrome c reductase, complex III subunit VII [Source:MGI Symbol;Acc:MGI:107807]
81. Cdc42 ENSMUSG00000006699 109.99 1142.83 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
82. Gm10180 ENSMUSG00000066809 109.99 1142.83 predicted gene 10180 [Source:MGI Symbol;Acc:MGI:3701608]
83. Hnrnpa0 ENSMUSG00000007836 109.99 1142.83 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
84. Rpl26 ENSMUSG00000060938 109.99 1142.83 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
85. Tsc22d1 ENSMUSG00000022010 109.99 1142.83 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
86. Fscn1 ENSMUSG00000029581 106.66 1108.23 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
87. Gm15501 ENSMUSG00000087412 106.66 1108.23 predicted pseudogene 15501 [Source:MGI Symbol;Acc:MGI:3704296]
88. Gm17132 ENSMUSG00000061331 106.66 1108.23 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
89. Hba-a1 ENSMUSG00000069919 106.66 1108.23 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
90. Hsp90ab1 ENSMUSG00000023944 106.66 1108.23 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
91. Rpl22 ENSMUSG00000028936 106.66 1108.23 ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:99262]
92. Cox6c ENSMUSG00000014313 103.33 1073.63 cytochrome c oxidase subunit 6C [Source:MGI Symbol;Acc:MGI:104614]
93. Gm5963 ENSMUSG00000052192 103.33 1073.63 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
94. Peg3 ENSMUSG00000002265 103.33 1073.63 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
95. Rplp1 ENSMUSG00000007892 103.33 1073.63 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
96. Rps5 ENSMUSG00000012848 103.33 1073.63 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
97. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 103.33 1073.63 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
98. Sparc ENSMUSG00000018593 103.33 1073.63 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
99. Tubb2b ENSMUSG00000045136 103.33 1073.63 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
100. Rpl13 ENSMUSG00000000740 99.99 1038.93 ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA