Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s37.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3963.56 41179.63 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3848.35 39982.65 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Co2 ENSMUSG00000064354 2509.10 26068.44 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd1 ENSMUSG00000064341 2322.73 24132.13 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2274.45 23630.53 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Atp6 ENSMUSG00000064357 2259.20 23472.09 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Rnr2 ENSMUSG00000064339 1612.02 16748.17 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1367.21 14204.71 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. H19 ENSMUSG00000000031 1124.10 11678.90 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Nd3 ENSMUSG00000064360 961.45 9989.04 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Nd2 ENSMUSG00000064345 815.75 8475.28 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Co3 ENSMUSG00000064358 767.47 7973.67 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Mdk ENSMUSG00000027239 754.76 7841.62 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Igf2 ENSMUSG00000048583 656.50 6820.74 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 617.53 6415.86 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Actb ENSMUSG00000029580 591.27 6143.03 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Gm13340 ENSMUSG00000083563 405.76 4215.67 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Rnr1 ENSMUSG00000064337 396.44 4118.84 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. mt-Nd5 ENSMUSG00000064367 365.10 3793.23 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Rpsa ENSMUSG00000032518 348.16 3617.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Gm10800 ENSMUSG00000075014 332.06 3449.96 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Npm1 ENSMUSG00000057113 292.25 3036.35 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Cfl1 ENSMUSG00000056201 287.17 2983.57 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Ubb ENSMUSG00000019505 258.36 2684.25 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Tuba1b ENSMUSG00000023004 239.73 2490.69 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Hmga2 ENSMUSG00000056758 232.10 2411.42 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
27. Cdkn1c ENSMUSG00000037664 228.72 2376.30 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
28. Nedd4 ENSMUSG00000032216 227.02 2358.64 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Eif4g2 ENSMUSG00000005610 220.24 2288.20 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Tpt1 ENSMUSG00000060126 210.93 2191.47 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Pkm ENSMUSG00000032294 199.91 2076.98 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Pbx1 ENSMUSG00000052534 193.98 2015.37 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Tubb5 ENSMUSG00000001525 192.29 1997.81 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Hbb-y ENSMUSG00000052187 188.90 1962.59 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
35. Hsp90ab1 ENSMUSG00000023944 172.81 1795.42 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Rps26 ENSMUSG00000025362 163.49 1698.59 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Col3a1 ENSMUSG00000026043 162.64 1689.76 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
38. Crabp1 ENSMUSG00000032291 159.25 1654.54 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
39. Eef1b2 ENSMUSG00000025967 155.02 1610.59 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Set ENSMUSG00000054766 154.17 1601.76 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
41. Acta2 ENSMUSG00000035783 153.32 1592.93 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
42. Eif5a ENSMUSG00000078812 152.48 1584.20 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Banf1 ENSMUSG00000024844 149.09 1548.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Rpl23 ENSMUSG00000071415 149.09 1548.98 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Hsp90aa1 ENSMUSG00000021270 144.85 1504.93 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
46. Chchd2 ENSMUSG00000070493 144.01 1496.20 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Rpl4 ENSMUSG00000032399 144.01 1496.20 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Rrm2 ENSMUSG00000020649 141.46 1469.71 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
49. Atp5g3 ENSMUSG00000018770 140.62 1460.98 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Rps20 ENSMUSG00000028234 138.92 1443.32 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Ran ENSMUSG00000029430 135.54 1408.20 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
52. Tmsb4x ENSMUSG00000049775 133.84 1390.54 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
53. Ywhab ENSMUSG00000018326 129.61 1346.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Ybx1 ENSMUSG00000028639 128.76 1337.76 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
55. Fkbp1a ENSMUSG00000032966 127.91 1328.93 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Myl6 ENSMUSG00000090841 127.06 1320.10 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Gm5805 ENSMUSG00000061848 122.83 1276.15 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
58. Hmgn1 ENSMUSG00000040681 121.13 1258.49 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
59. Paics ENSMUSG00000029247 116.90 1214.54 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
60. Rps4x ENSMUSG00000031320 116.05 1205.71 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
61. Rps3a1 ENSMUSG00000028081 115.20 1196.88 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
62. Peg3 ENSMUSG00000002265 113.51 1179.32 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
63. Grb10 ENSMUSG00000020176 112.66 1170.49 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
64. Actc1 ENSMUSG00000068614 110.97 1152.93 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
65. Pcbp1 ENSMUSG00000051695 109.28 1135.37 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Cdk4 ENSMUSG00000006728 105.89 1100.15 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Rps5 ENSMUSG00000012848 105.04 1091.32 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Hnrnpc ENSMUSG00000060373 104.19 1082.49 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
69. Tuba1a ENSMUSG00000072235 102.50 1064.93 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
70. Gpc3 ENSMUSG00000055653 97.42 1012.15 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
71. Hnrnpa2b1 ENSMUSG00000004980 96.57 1003.32 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
72. Hba-a1 ENSMUSG00000069919 94.87 985.66 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
73. Pabpc1 ENSMUSG00000022283 94.87 985.66 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Ndufa12 ENSMUSG00000020022 94.03 976.93 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
75. Trim28 ENSMUSG00000005566 94.03 976.93 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Wbp5 92.33 959.27 WW domain binding protein 5
77. Ngfrap1 91.49 950.54 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Ago2 ENSMUSG00000036698 90.64 941.71 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
79. Rplp1 ENSMUSG00000007892 89.79 932.88 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
80. Gm8292 ENSMUSG00000100215 88.94 924.05 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
81. H3f3b ENSMUSG00000016559 88.94 924.05 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
82. Rpl32 ENSMUSG00000057841 88.94 924.05 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
83. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 88.10 915.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
84. Hnrnph1 ENSMUSG00000007850 85.56 888.93 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
85. Ssbp3 ENSMUSG00000061887 85.56 888.93 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
86. Sub1 ENSMUSG00000022205 84.71 880.10 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
87. Ywhaq ENSMUSG00000076432 84.71 880.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
88. Gm14303 ENSMUSG00000081344 83.86 871.27 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
89. Morf4l1 ENSMUSG00000062270 83.86 871.27 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
90. Ddx5 ENSMUSG00000020719 83.02 862.54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
91. Fkbp4 ENSMUSG00000030357 83.02 862.54 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Rpl18a ENSMUSG00000045128 82.17 853.71 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
93. 2810417H13Rik 81.32 844.88 RIKEN cDNA 2810417H13 gene
94. Marcks ENSMUSG00000069662 81.32 844.88 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
95. Anp32b ENSMUSG00000028333 80.47 836.05 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Gm15459 ENSMUSG00000100801 80.47 836.05 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
97. Tmsb10 ENSMUSG00000079523 79.63 827.32 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
98. Ywhaz ENSMUSG00000022285 79.63 827.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
99. Morf4l2 ENSMUSG00000031422 78.78 818.49 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
100. Srsf3 ENSMUSG00000071172 78.78 818.49 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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