Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_3, section s36.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4169.90 43321.08 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3521.77 36587.66 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2403.63 24971.30 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2395.32 24884.97 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2246.13 23335.04 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2176.31 22609.68 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1402.37 14569.22 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1041.55 10820.66 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Actb ENSMUSG00000029580 916.36 9520.06 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd3 ENSMUSG00000064360 854.22 8874.49 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Co3 ENSMUSG00000064358 816.69 8484.59 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Mdk ENSMUSG00000027239 758.25 7877.46 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Nd2 ENSMUSG00000064345 689.96 7167.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Eef1a1 ENSMUSG00000037742 672.43 6985.87 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Igf2 ENSMUSG00000048583 590.60 6135.74 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. mt-Rnr2 ENSMUSG00000064339 514.32 5343.27 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Gm13340 ENSMUSG00000083563 408.81 4247.13 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Nd5 ENSMUSG00000064367 335.29 3483.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Tuba1b ENSMUSG00000023004 307.91 3198.88 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Rpsa ENSMUSG00000032518 304.84 3166.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tubb5 ENSMUSG00000001525 288.84 3000.76 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Cfl1 ENSMUSG00000056201 271.00 2815.42 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Nedd4 ENSMUSG00000032216 264.54 2748.31 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Pkm ENSMUSG00000032294 258.70 2687.63 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Npm1 ENSMUSG00000057113 245.47 2550.19 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Hbb-y ENSMUSG00000052187 236.86 2460.74 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
27. Cdkn1c ENSMUSG00000037664 235.32 2444.74 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
28. Tpt1 ENSMUSG00000060126 211.94 2201.84 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Hmga2 ENSMUSG00000056758 211.63 2198.62 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Ubb ENSMUSG00000019505 202.10 2099.62 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Crabp1 ENSMUSG00000032291 201.17 2089.95 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
32. Eif4g2 ENSMUSG00000005610 201.17 2089.95 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Pbx1 ENSMUSG00000052534 193.79 2013.28 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. Rpl4 ENSMUSG00000032399 184.26 1914.28 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Hsp90ab1 ENSMUSG00000023944 180.56 1875.84 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Chchd2 ENSMUSG00000070493 166.72 1732.05 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Acta2 ENSMUSG00000035783 165.18 1716.05 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
38. Rpl23 ENSMUSG00000071415 163.34 1696.94 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Hba-a1 ENSMUSG00000069919 162.11 1684.16 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
40. Eif5a ENSMUSG00000078812 154.11 1601.05 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Rps20 ENSMUSG00000028234 153.50 1594.71 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Hba-x ENSMUSG00000055609 152.88 1588.27 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
43. Col3a1 ENSMUSG00000026043 148.27 1540.38 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
44. Hnrnpc ENSMUSG00000060373 144.27 1498.82 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Rps26 ENSMUSG00000025362 143.65 1492.38 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Set ENSMUSG00000054766 142.11 1476.38 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
47. Myl6 ENSMUSG00000090841 136.27 1415.71 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
48. Atp5g3 ENSMUSG00000018770 133.81 1390.15 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Grb10 ENSMUSG00000020176 131.96 1370.93 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
50. Hsp90aa1 ENSMUSG00000021270 128.27 1332.60 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Tmsb4x ENSMUSG00000049775 125.81 1307.04 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
52. Ywhab ENSMUSG00000018326 125.81 1307.04 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Eef1b2 ENSMUSG00000025967 124.58 1294.26 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Meg3 ENSMUSG00000021268 121.20 1259.15 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
55. Banf1 ENSMUSG00000024844 120.89 1255.93 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. Rrm2 ENSMUSG00000020649 116.27 1207.93 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
57. Ran ENSMUSG00000029430 115.97 1204.81 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Actc1 ENSMUSG00000068614 114.74 1192.03 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
59. Gm5805 ENSMUSG00000061848 114.12 1185.59 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
60. Rpl18a ENSMUSG00000045128 114.12 1185.59 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
61. Fkbp1a ENSMUSG00000032966 113.81 1182.37 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
62. Paics ENSMUSG00000029247 112.58 1169.59 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Ybx1 ENSMUSG00000028639 109.20 1134.48 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Hnrnpa2b1 ENSMUSG00000004980 107.97 1121.70 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
65. Rps4x ENSMUSG00000031320 107.66 1118.48 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Ago2 ENSMUSG00000036698 107.35 1115.26 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
67. Cdk4 ENSMUSG00000006728 104.89 1089.70 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
68. Pcbp1 ENSMUSG00000051695 104.28 1083.36 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
69. Rps3a1 ENSMUSG00000028081 103.36 1073.81 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
70. Tuba1a ENSMUSG00000072235 103.36 1073.81 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
71. Ywhaz ENSMUSG00000022285 102.74 1067.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
72. Hmgn1 ENSMUSG00000040681 100.59 1045.03 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
73. U2af2 ENSMUSG00000030435 100.28 1041.81 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
74. Rps5 ENSMUSG00000012848 98.43 1022.59 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 97.51 1013.03 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
76. Pabpc1 ENSMUSG00000022283 96.59 1003.47 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
77. Ndufa12 ENSMUSG00000020022 95.97 997.03 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.97 997.03 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
79. Trim28 ENSMUSG00000005566 95.67 993.92 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
80. Rplp1 ENSMUSG00000007892 95.36 990.69 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
81. Marcks ENSMUSG00000069662 94.43 981.03 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
82. Rpl32 ENSMUSG00000057841 94.13 977.92 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
83. Ngfrap1 93.82 974.70 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
84. Tmsb10 ENSMUSG00000079523 93.51 971.48 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
85. Tpm4 ENSMUSG00000031799 92.90 965.14 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
86. Ddx5 ENSMUSG00000020719 91.97 955.48 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
87. Peg3 ENSMUSG00000002265 91.97 955.48 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
88. Cox8a ENSMUSG00000035885 89.82 933.14 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
89. Gm14303 ENSMUSG00000081344 89.21 926.80 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
90. Anp32b ENSMUSG00000028333 85.51 888.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
91. Fkbp4 ENSMUSG00000030357 84.28 875.58 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Tecr ENSMUSG00000031708 84.28 875.58 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
93. H3f3b ENSMUSG00000016559 83.98 872.47 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
94. Rpl37 ENSMUSG00000041841 83.98 872.47 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
95. Lamp1 ENSMUSG00000031447 83.67 869.25 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
96. Hnrnph1 ENSMUSG00000007850 83.05 862.81 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
97. Morf4l1 ENSMUSG00000062270 83.05 862.81 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 82.75 859.69 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
99. Maged1 ENSMUSG00000025151 82.44 856.47 melanoma antigen, family D, 1 [Source:MGI Symbol;Acc:MGI:1930187]
100. Ywhae ENSMUSG00000020849 82.13 853.25 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA