Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s35.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3770.05 39167.73 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3756.91 39031.21 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2466.44 25624.29 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2367.42 24595.55 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2298.91 23883.79 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2091.50 21728.97 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1360.39 14133.34 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1101.36 11442.23 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 1083.52 11256.88 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Actb ENSMUSG00000029580 885.03 9194.74 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 792.11 8229.37 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 776.16 8063.67 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Mdk ENSMUSG00000027239 727.36 7556.67 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Co3 ENSMUSG00000064358 660.72 6864.34 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Igf2 ENSMUSG00000048583 649.93 6752.24 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Eef1a1 ENSMUSG00000037742 628.34 6527.94 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Nd5 ENSMUSG00000064367 378.69 3934.28 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Gm13340 ENSMUSG00000083563 373.06 3875.79 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hbb-y ENSMUSG00000052187 348.19 3617.41 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Rpsa ENSMUSG00000032518 341.15 3544.27 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Cfl1 ENSMUSG00000056201 295.63 3071.35 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Nedd4 ENSMUSG00000032216 282.03 2930.06 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Cdkn1c ENSMUSG00000037664 254.34 2642.38 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
24. Tuba1b ENSMUSG00000023004 247.77 2574.13 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Npm1 ENSMUSG00000057113 245.42 2549.71 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Hmga2 ENSMUSG00000056758 242.14 2515.64 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
27. Ubb ENSMUSG00000019505 226.18 2349.82 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Crabp1 ENSMUSG00000032291 223.37 2320.63 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
29. Tubb5 ENSMUSG00000001525 206.01 2140.27 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Tpt1 ENSMUSG00000060126 200.37 2081.68 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Hsp90ab1 ENSMUSG00000023944 198.03 2057.37 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Pbx1 ENSMUSG00000052534 196.62 2042.72 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Hba-a1 ENSMUSG00000069919 190.05 1974.46 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
34. Eif4g2 ENSMUSG00000005610 189.58 1969.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Pkm ENSMUSG00000032294 186.77 1940.39 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Hba-x ENSMUSG00000055609 178.32 1852.60 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
37. Rps20 ENSMUSG00000028234 177.85 1847.72 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Rpl4 ENSMUSG00000032399 172.69 1794.11 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Set ENSMUSG00000054766 160.49 1667.36 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
40. Acta2 ENSMUSG00000035783 159.08 1652.71 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
41. Rpl23 ENSMUSG00000071415 153.92 1599.10 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Banf1 ENSMUSG00000024844 148.76 1545.49 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
43. Grb10 ENSMUSG00000020176 144.53 1501.55 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Atp5g3 ENSMUSG00000018770 143.59 1491.78 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Fkbp1a ENSMUSG00000032966 142.66 1482.12 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Rrm2 ENSMUSG00000020649 142.19 1477.24 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
47. Eif5a ENSMUSG00000078812 141.72 1472.35 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Rps26 ENSMUSG00000025362 141.72 1472.35 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Hnrnpc ENSMUSG00000060373 139.37 1447.94 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Actc1 ENSMUSG00000068614 137.02 1423.53 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
51. Myl6 ENSMUSG00000090841 136.56 1418.75 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Col3a1 ENSMUSG00000026043 134.68 1399.21 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
53. Chchd2 ENSMUSG00000070493 134.21 1394.33 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
54. Eef1b2 ENSMUSG00000025967 133.27 1384.57 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Ywhab ENSMUSG00000018326 133.27 1384.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Tmsb4x ENSMUSG00000049775 127.17 1321.19 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
57. Hsp90aa1 ENSMUSG00000021270 126.23 1311.43 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Ago2 ENSMUSG00000036698 121.07 1257.82 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. Ran ENSMUSG00000029430 116.85 1213.98 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
60. Paics ENSMUSG00000029247 114.03 1184.68 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Pcbp1 ENSMUSG00000051695 113.09 1174.91 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
62. Meg3 ENSMUSG00000021268 112.62 1170.03 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
63. Rps4x ENSMUSG00000031320 108.40 1126.19 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Rpl18a ENSMUSG00000045128 107.93 1121.30 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
65. Ybx1 ENSMUSG00000028639 106.52 1106.66 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
66. Cdk4 ENSMUSG00000006728 105.58 1096.89 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Marcks ENSMUSG00000069662 104.18 1082.34 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
68. Rps3a1 ENSMUSG00000028081 103.71 1077.46 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Hmgn1 ENSMUSG00000040681 103.24 1072.58 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
70. Gm5805 ENSMUSG00000061848 98.08 1018.97 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
71. Pabpc1 ENSMUSG00000022283 97.14 1009.20 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
72. Trim28 ENSMUSG00000005566 97.14 1009.20 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
73. Hnrnpa2b1 ENSMUSG00000004980 96.67 1004.32 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
74. Hba-a2 ENSMUSG00000069917 96.20 999.44 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
75. Hbb-bh1 ENSMUSG00000052217 96.20 999.44 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
76. Tmsb10 ENSMUSG00000079523 95.26 989.67 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 94.79 984.79 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Ngfrap1 93.38 970.14 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
79. mt-Rnr1 ENSMUSG00000064337 92.91 965.26 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
80. Hnrnph1 ENSMUSG00000007850 92.44 960.38 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
81. Peg3 ENSMUSG00000002265 91.51 950.71 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
82. Ddx5 ENSMUSG00000020719 90.57 940.95 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
83. H3f3b ENSMUSG00000016559 90.10 936.07 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
84. Rpl32 ENSMUSG00000057841 90.10 936.07 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
85. Morf4l1 ENSMUSG00000062270 88.22 916.53 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
86. Eef2 ENSMUSG00000034994 87.75 911.65 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
87. Gm10800 ENSMUSG00000075014 87.75 911.65 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
88. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 87.75 911.65 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
89. Rplp1 ENSMUSG00000007892 87.75 911.65 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
90. Tecr ENSMUSG00000031708 87.28 906.77 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
91. Rpl37 ENSMUSG00000041841 84.94 882.46 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
92. Cox8a ENSMUSG00000035885 83.53 867.81 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
93. Wbp5 83.06 862.93 WW domain binding protein 5
94. Fkbp4 ENSMUSG00000030357 82.59 858.04 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
95. Gm15459 ENSMUSG00000100801 82.12 853.16 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
96. Gpc3 ENSMUSG00000055653 82.12 853.16 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
97. Rpl8 ENSMUSG00000003970 82.12 853.16 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
98. Rps5 ENSMUSG00000012848 82.12 853.16 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
99. Ywhaz ENSMUSG00000022285 81.18 843.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
100. U2af2 ENSMUSG00000030435 80.71 838.51 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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