Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s34.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3562.83 37017.72 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3322.91 34524.96 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2172.14 22568.49 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Co2 ENSMUSG00000064354 2106.16 21882.95 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Atp6 ENSMUSG00000064357 2095.88 21776.15 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd1 ENSMUSG00000064341 1942.50 20182.53 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr2 ENSMUSG00000064339 1243.31 12917.96 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1205.60 12526.16 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. H19 ENSMUSG00000000031 1070.22 11119.56 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Actb ENSMUSG00000029580 844.87 8778.18 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 744.61 7736.48 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 739.47 7683.08 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Igf2 ENSMUSG00000048583 688.06 7148.93 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. mt-Co3 ENSMUSG00000064358 681.20 7077.65 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Mdk ENSMUSG00000027239 676.06 7024.25 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Eef1a1 ENSMUSG00000037742 560.39 5822.44 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Nd5 ENSMUSG00000064367 506.40 5261.48 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Hbb-y ENSMUSG00000052187 373.59 3881.59 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Gm13340 ENSMUSG00000083563 354.74 3685.74 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Gm10800 ENSMUSG00000075014 323.04 3356.38 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Cdkn1c ENSMUSG00000037664 313.61 3258.40 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
22. Npm1 ENSMUSG00000057113 305.90 3178.29 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Hmga2 ENSMUSG00000056758 305.04 3169.36 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Tuba1b ENSMUSG00000023004 249.35 2590.74 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Rpsa ENSMUSG00000032518 245.92 2555.10 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Nedd4 ENSMUSG00000032216 233.92 2430.42 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Cfl1 ENSMUSG00000056201 233.07 2421.59 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Hba-a1 ENSMUSG00000069919 227.93 2368.19 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
29. Tubb5 ENSMUSG00000001525 213.36 2216.81 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Pkm ENSMUSG00000032294 209.93 2181.17 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Ubb ENSMUSG00000019505 205.65 2136.70 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Hsp90ab1 ENSMUSG00000023944 197.08 2047.66 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Chchd2 ENSMUSG00000070493 196.22 2038.72 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Tpt1 ENSMUSG00000060126 181.65 1887.34 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Eif5a ENSMUSG00000078812 179.94 1869.57 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Acta2 ENSMUSG00000035783 179.08 1860.64 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
37. Gm15459 ENSMUSG00000100801 179.08 1860.64 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
38. Eif4g2 ENSMUSG00000005610 176.51 1833.93 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Hba-x ENSMUSG00000055609 162.80 1691.49 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
40. Rps20 ENSMUSG00000028234 161.09 1673.72 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Pbx1 ENSMUSG00000052534 156.81 1629.25 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Rpl4 ENSMUSG00000032399 152.52 1584.68 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Crabp1 ENSMUSG00000032291 151.66 1575.74 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
44. Atp5g3 ENSMUSG00000018770 148.24 1540.21 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Rps4x ENSMUSG00000031320 148.24 1540.21 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
46. Ywhab ENSMUSG00000018326 147.38 1531.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Rpl23 ENSMUSG00000071415 146.52 1522.34 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Pcbp1 ENSMUSG00000051695 137.95 1433.30 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Eef1b2 ENSMUSG00000025967 136.24 1415.53 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Col3a1 ENSMUSG00000026043 135.38 1406.60 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
51. Tmsb4x ENSMUSG00000049775 132.81 1379.89 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
52. Grb10 ENSMUSG00000020176 131.96 1371.06 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Hnrnpc ENSMUSG00000060373 129.39 1344.36 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Meg3 ENSMUSG00000021268 129.39 1344.36 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
55. Actc1 ENSMUSG00000068614 125.96 1308.72 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
56. Rps3a1 ENSMUSG00000028081 125.96 1308.72 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
57. Ybx1 ENSMUSG00000028639 123.39 1282.02 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
58. Hsp90aa1 ENSMUSG00000021270 121.67 1264.15 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Trim28 ENSMUSG00000005566 120.82 1255.32 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
60. Myl6 ENSMUSG00000090841 119.10 1237.45 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
61. Ago2 ENSMUSG00000036698 116.53 1210.74 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
62. Banf1 ENSMUSG00000024844 113.96 1184.04 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
63. Rps26 ENSMUSG00000025362 113.96 1184.04 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Fkbp1a ENSMUSG00000032966 111.39 1157.34 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
65. Ran ENSMUSG00000029430 111.39 1157.34 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
66. Rps5 ENSMUSG00000012848 110.54 1148.51 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Set ENSMUSG00000054766 110.54 1148.51 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
68. Rpl18a ENSMUSG00000045128 109.68 1139.57 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
69. Pabpc1 ENSMUSG00000022283 108.82 1130.64 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Paics ENSMUSG00000029247 108.82 1130.64 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
71. mt-Rnr1 ENSMUSG00000064337 108.82 1130.64 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
72. Hmgn1 ENSMUSG00000040681 107.96 1121.70 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
73. Rplp1 ENSMUSG00000007892 107.96 1121.70 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
74. Gm9844 ENSMUSG00000091955 106.25 1103.94 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
75. Rps9 ENSMUSG00000006333 105.39 1095.00 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
76. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 104.54 1086.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
77. Rpl32 ENSMUSG00000057841 102.82 1068.30 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
78. Tpm4 ENSMUSG00000031799 101.97 1059.47 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
79. Marcksl1 ENSMUSG00000047945 101.11 1050.53 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
80. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 100.25 1041.60 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
81. Ywhae ENSMUSG00000020849 99.40 1032.76 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
82. Marcks ENSMUSG00000069662 98.54 1023.83 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
83. Anp32b ENSMUSG00000028333 96.83 1006.06 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Tuba1a ENSMUSG00000072235 96.83 1006.06 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
85. Gm17132 ENSMUSG00000061331 95.11 988.19 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
86. Cdk4 ENSMUSG00000006728 93.40 970.42 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
87. Fscn1 ENSMUSG00000029581 90.83 943.72 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
88. Rpl8 ENSMUSG00000003970 89.97 934.79 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
89. Rpl41 ENSMUSG00000093674 89.11 925.85 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
90. Hba-a2 ENSMUSG00000069917 87.40 908.08 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
91. Ndufa12 ENSMUSG00000020022 85.69 890.32 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
92. Gm5805 ENSMUSG00000061848 83.97 872.45 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
93. Hbb-bh1 ENSMUSG00000052217 83.97 872.45 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
94. Pfn1 ENSMUSG00000018293 83.97 872.45 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
95. Son ENSMUSG00000022961 83.97 872.45 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
96. Sub1 ENSMUSG00000022205 83.97 872.45 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
97. Tpm1 ENSMUSG00000032366 83.12 863.61 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
98. Gm14303 ENSMUSG00000081344 82.26 854.68 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Eef2 ENSMUSG00000034994 81.40 845.74 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Ngfrap1 81.40 845.74 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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