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Experiment Mouse_E11_5_slice_3, section s33.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4223.28 43874.93 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3712.16 38564.99 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2325.30 24157.14 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2291.40 23804.96 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2109.08 21910.87 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2084.77 21658.32 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1432.92 14886.36 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1342.08 13942.64 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 1207.11 12540.46 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd3 ENSMUSG00000064360 839.92 8725.78 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Nd2 ENSMUSG00000064345 719.66 7476.42 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Co3 ENSMUSG00000064358 716.46 7443.18 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Igf2 ENSMUSG00000048583 653.77 6791.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Eef1a1 ENSMUSG00000037742 642.26 6672.33 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Rnr2 ENSMUSG00000064339 626.26 6506.11 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Mdk ENSMUSG00000027239 594.92 6180.52 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Gm13340 ENSMUSG00000083563 346.72 3602.01 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Nd5 ENSMUSG00000064367 333.92 3469.04 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Cdkn1c ENSMUSG00000037664 326.25 3389.36 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
20. Cfl1 ENSMUSG00000056201 312.17 3243.08 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Gm10800 ENSMUSG00000075014 310.89 3229.78 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Rpsa ENSMUSG00000032518 289.14 3003.83 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Npm1 ENSMUSG00000057113 259.72 2698.19 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tuba1b ENSMUSG00000023004 252.68 2625.05 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Acta2 ENSMUSG00000035783 247.56 2571.86 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
26. Tpt1 ENSMUSG00000060126 230.93 2399.09 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Pkm ENSMUSG00000032294 225.81 2345.90 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Hmga2 ENSMUSG00000056758 225.17 2339.25 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
29. Tubb5 ENSMUSG00000001525 221.97 2306.01 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Nedd4 ENSMUSG00000032216 211.10 2193.08 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Ubb ENSMUSG00000019505 209.18 2173.14 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Eif4g2 ENSMUSG00000005610 183.59 1907.28 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Hsp90ab1 ENSMUSG00000023944 182.31 1893.99 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Rpl23 ENSMUSG00000071415 181.03 1880.69 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. Tmsb4x ENSMUSG00000049775 169.52 1761.11 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
36. Hbb-y ENSMUSG00000052187 165.68 1721.22 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
37. Ywhab ENSMUSG00000018326 161.84 1681.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
38. Chchd2 ENSMUSG00000070493 160.56 1668.03 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Atp5g3 ENSMUSG00000018770 156.09 1621.59 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Myl6 ENSMUSG00000090841 155.45 1614.94 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
41. Eif5a ENSMUSG00000078812 153.53 1595.00 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Eef1b2 ENSMUSG00000025967 152.25 1581.70 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Rps20 ENSMUSG00000028234 152.25 1581.70 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Rpl4 ENSMUSG00000032399 149.05 1548.45 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Actc1 ENSMUSG00000068614 145.85 1515.21 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
46. Rpl18a ENSMUSG00000045128 145.85 1515.21 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Rps4x ENSMUSG00000031320 135.62 1408.93 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
48. Pbx1 ENSMUSG00000052534 133.70 1388.99 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
49. Eef2 ENSMUSG00000034994 133.06 1382.34 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
50. Rps26 ENSMUSG00000025362 131.78 1369.04 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Grb10 ENSMUSG00000020176 131.14 1362.39 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
52. Rpl37 ENSMUSG00000041841 131.14 1362.39 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Hnrnpc ENSMUSG00000060373 129.86 1349.09 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Hba-a1 ENSMUSG00000069919 129.22 1342.44 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
55. Ybx1 ENSMUSG00000028639 126.02 1309.20 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
56. Fkbp1a ENSMUSG00000032966 122.18 1269.31 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Ran ENSMUSG00000029430 121.54 1262.66 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Col3a1 ENSMUSG00000026043 120.26 1249.36 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
59. Tmsb10 ENSMUSG00000079523 120.26 1249.36 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
60. Hmgn1 ENSMUSG00000040681 115.79 1202.92 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
61. U2af2 ENSMUSG00000030435 115.15 1196.27 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Rpl41 ENSMUSG00000093674 113.87 1182.98 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
63. Hsp90aa1 ENSMUSG00000021270 112.59 1169.68 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Pcbp1 ENSMUSG00000051695 107.47 1116.49 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Crabp1 ENSMUSG00000032291 106.19 1103.19 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
66. Pabpc1 ENSMUSG00000022283 105.55 1096.54 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
67. Rps5 ENSMUSG00000012848 104.27 1083.24 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Banf1 ENSMUSG00000024844 103.63 1076.59 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
69. Paics ENSMUSG00000029247 103.63 1076.59 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
70. Rplp1 ENSMUSG00000007892 102.99 1069.95 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
71. Marcks ENSMUSG00000069662 102.35 1063.30 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
72. Rps9 ENSMUSG00000006333 99.15 1030.05 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Gm5805 ENSMUSG00000061848 97.87 1016.75 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
74. Trim28 ENSMUSG00000005566 97.23 1010.11 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
75. Set ENSMUSG00000054766 96.59 1003.46 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
76. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.95 996.81 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
77. Rps3a1 ENSMUSG00000028081 95.31 990.16 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
78. Rrm2 ENSMUSG00000020649 95.31 990.16 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
79. Meg3 ENSMUSG00000021268 93.40 970.32 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
80. Tpm4 ENSMUSG00000031799 92.76 963.67 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
81. 2810417H13Rik 90.84 943.72 RIKEN cDNA 2810417H13 gene
82. Ago2 ENSMUSG00000036698 90.20 937.07 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
83. Cdk4 ENSMUSG00000006728 89.56 930.42 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
84. Lamp1 ENSMUSG00000031447 89.56 930.42 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
85. Ywhaz ENSMUSG00000022285 89.56 930.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
86. Ddx5 ENSMUSG00000020719 87.64 910.48 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
87. Rpl8 ENSMUSG00000003970 87.00 903.83 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
88. Morf4l2 ENSMUSG00000031422 85.72 890.53 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
89. Srsf3 ENSMUSG00000071172 85.72 890.53 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
90. Rpl32 ENSMUSG00000057841 85.08 883.88 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
91. Ndufa12 ENSMUSG00000020022 84.44 877.23 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
92. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 83.16 863.93 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
93. Sub1 ENSMUSG00000022205 82.52 857.29 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
94. Ywhae ENSMUSG00000020849 82.52 857.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
95. Flna ENSMUSG00000031328 81.88 850.64 filamin, alpha [Source:MGI Symbol;Acc:MGI:95556]
96. Hnrnpa2b1 ENSMUSG00000004980 81.88 850.64 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
97. Ldha ENSMUSG00000063229 81.88 850.64 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
98. Capns1 ENSMUSG00000001794 80.60 837.34 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
99. Tpm1 ENSMUSG00000032366 79.96 830.69 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
100. Fscn1 ENSMUSG00000029581 79.32 824.04 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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