Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s32.

Sample reads: 96,261. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3880.89 40316.13 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3426.90 35599.91 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2372.47 24646.10 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2273.61 23619.10 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2247.07 23343.40 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2113.44 21955.20 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1389.43 14433.91 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1266.78 13159.78 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 970.22 10079.01 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 836.59 8690.81 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 824.69 8567.19 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Igf2 ENSMUSG00000048583 751.46 7806.45 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. mt-Rnr2 ENSMUSG00000064339 693.80 7207.45 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Eef1a1 ENSMUSG00000037742 621.49 6456.27 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 561.08 5828.71 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd2 ENSMUSG00000064345 560.17 5819.25 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Gm13340 ENSMUSG00000083563 370.70 3850.97 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 325.85 3385.05 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Tubb5 ENSMUSG00000001525 291.07 3023.74 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Tuba1b ENSMUSG00000023004 290.15 3014.19 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Cdkn1c ENSMUSG00000037664 270.93 2814.52 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
22. Hmga2 ENSMUSG00000056758 270.01 2804.96 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Npm1 ENSMUSG00000057113 267.27 2776.50 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Cfl1 ENSMUSG00000056201 254.45 2643.32 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Acta2 ENSMUSG00000035783 234.32 2434.20 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
26. Pkm ENSMUSG00000032294 226.08 2348.60 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Ubb ENSMUSG00000019505 220.59 2291.57 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Eif4g2 ENSMUSG00000005610 217.84 2263.00 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Rpl4 ENSMUSG00000032399 211.44 2196.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Rpl23 ENSMUSG00000071415 208.69 2167.95 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Nedd4 ENSMUSG00000032216 202.28 2101.36 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. mt-Nd5 ENSMUSG00000064367 201.37 2091.91 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
33. Hsp90ab1 ENSMUSG00000023944 175.74 1825.65 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Hbb-y ENSMUSG00000052187 171.16 1778.07 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
35. Rps20 ENSMUSG00000028234 171.16 1778.07 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
36. Chchd2 ENSMUSG00000070493 162.92 1692.47 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Rps26 ENSMUSG00000025362 156.52 1625.99 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
38. Tpt1 ENSMUSG00000060126 156.52 1625.99 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Eif5a ENSMUSG00000078812 152.86 1587.97 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Col3a1 ENSMUSG00000026043 151.03 1568.96 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
41. Myl6 ENSMUSG00000090841 142.79 1483.36 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Atp5g3 ENSMUSG00000018770 140.96 1464.34 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Grb10 ENSMUSG00000020176 140.96 1464.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Tmsb4x ENSMUSG00000049775 140.96 1464.34 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
45. Eef1b2 ENSMUSG00000025967 140.04 1454.79 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Banf1 ENSMUSG00000024844 133.63 1388.20 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Paics ENSMUSG00000029247 131.80 1369.19 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Rps4x ENSMUSG00000031320 131.80 1369.19 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
49. Tmsb10 ENSMUSG00000079523 131.80 1369.19 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
50. Pbx1 ENSMUSG00000052534 129.06 1340.72 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
51. Rpl41 ENSMUSG00000093674 129.06 1340.72 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
52. Ran ENSMUSG00000029430 127.23 1321.71 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Rplp1 ENSMUSG00000007892 124.48 1293.14 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Crabp1 ENSMUSG00000032291 123.57 1283.69 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
55. Hnrnpc ENSMUSG00000060373 123.57 1283.69 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
56. Hsp90aa1 ENSMUSG00000021270 123.57 1283.69 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Ywhab ENSMUSG00000018326 122.65 1274.13 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Pcbp1 ENSMUSG00000051695 120.82 1255.12 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Hba-a1 ENSMUSG00000069919 119.90 1245.57 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
60. Rpl18a ENSMUSG00000045128 119.90 1245.57 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
61. Actc1 ENSMUSG00000068614 116.24 1207.54 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
62. Ybx1 ENSMUSG00000028639 113.50 1179.08 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
63. Cdk4 ENSMUSG00000006728 110.75 1150.51 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
64. Rps3a1 ENSMUSG00000028081 110.75 1150.51 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
65. Col1a1 ENSMUSG00000001506 108.01 1122.05 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
66. Rpl37 ENSMUSG00000041841 105.26 1093.48 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
67. Tpm1 ENSMUSG00000032366 104.34 1083.92 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
68. Set ENSMUSG00000054766 102.51 1064.91 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
69. Hmgn1 ENSMUSG00000040681 101.60 1055.46 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
70. Rpl32 ENSMUSG00000057841 101.60 1055.46 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
71. Fkbp1a ENSMUSG00000032966 100.68 1045.90 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
72. Meg3 ENSMUSG00000021268 100.68 1045.90 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
73. Pabpc1 ENSMUSG00000022283 100.68 1045.90 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Marcks ENSMUSG00000069662 99.77 1036.45 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Tuba1a ENSMUSG00000072235 97.94 1017.44 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
76. Ywhae ENSMUSG00000020849 97.94 1017.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
77. Gm14303 ENSMUSG00000081344 97.02 1007.88 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
78. U2af2 ENSMUSG00000030435 97.02 1007.88 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
79. Gm9844 ENSMUSG00000091955 96.11 998.43 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
80. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 96.11 998.43 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
81. Rpl39-ps ENSMUSG00000036305 96.11 998.43 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
82. Rps5 ENSMUSG00000012848 95.19 988.87 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
83. mt-Rnr1 ENSMUSG00000064337 95.19 988.87 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
84. Hnrnpa2b1 ENSMUSG00000004980 92.45 960.40 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
85. H3f3b ENSMUSG00000016559 91.53 950.85 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
86. Ndufa12 ENSMUSG00000020022 91.53 950.85 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
87. Trim28 ENSMUSG00000005566 91.53 950.85 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
88. Gm14586 ENSMUSG00000083621 90.62 941.39 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Hba-x ENSMUSG00000055609 90.62 941.39 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
90. Pfn1 ENSMUSG00000018293 90.62 941.39 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
91. Rpl8 ENSMUSG00000003970 90.62 941.39 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
92. Fscn1 ENSMUSG00000029581 88.78 922.28 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
93. Ago2 ENSMUSG00000036698 87.87 912.83 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
94. Cox8a ENSMUSG00000035885 87.87 912.83 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
95. Ddx5 ENSMUSG00000020719 87.87 912.83 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
96. Eef2 ENSMUSG00000034994 86.04 893.82 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
97. Sub1 ENSMUSG00000022205 85.12 884.26 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
98. Calr ENSMUSG00000003814 83.29 865.25 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
99. Gm5805 ENSMUSG00000061848 83.29 865.25 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
100. Anp32b ENSMUSG00000028333 81.46 846.24 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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