Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s31.

Sample reads: 96,259. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3942.31 40955.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3109.43 32302.78 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2566.20 26659.35 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. H19 ENSMUSG00000000031 2199.73 22852.22 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
5. mt-Nd4 ENSMUSG00000064363 1788.85 18583.74 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 1642.63 17064.71 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co2 ENSMUSG00000064354 1297.45 13478.75 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Co1 ENSMUSG00000064351 1158.63 12036.60 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Mdk ENSMUSG00000027239 967.07 10046.55 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. Actb ENSMUSG00000029580 805.12 8364.11 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Igf2 ENSMUSG00000048583 789.39 8200.70 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
12. mt-Nd3 ENSMUSG00000064360 688.52 7152.79 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Eef1a1 ENSMUSG00000037742 687.59 7143.13 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd2 ENSMUSG00000064345 674.63 7008.49 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. mt-Co3 ENSMUSG00000064358 653.35 6787.42 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Hbb-y ENSMUSG00000052187 498.80 5181.86 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Cfl1 ENSMUSG00000056201 466.41 4845.37 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
18. Gm13340 ENSMUSG00000083563 386.83 4018.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Pkm ENSMUSG00000032294 356.29 3701.37 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Rpsa ENSMUSG00000032518 339.63 3528.30 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tuba1b ENSMUSG00000023004 324.82 3374.44 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Cdkn1c ENSMUSG00000037664 309.09 3211.03 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
23. Rpl18a ENSMUSG00000045128 308.17 3201.47 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
24. Tubb5 ENSMUSG00000001525 285.03 2961.08 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Tpt1 ENSMUSG00000060126 268.37 2788.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Hba-a1 ENSMUSG00000069919 267.45 2778.44 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Hba-x ENSMUSG00000055609 241.54 2509.27 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
28. Ubb ENSMUSG00000019505 226.73 2355.42 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. mt-Nd5 ENSMUSG00000064367 217.47 2259.22 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
30. Rps20 ENSMUSG00000028234 216.55 2249.66 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Rpl4 ENSMUSG00000032399 213.77 2220.78 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Nedd4 ENSMUSG00000032216 209.15 2172.79 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Myl6 ENSMUSG00000090841 193.41 2009.27 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
34. Hmga2 ENSMUSG00000056758 189.71 1970.83 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Eif4g2 ENSMUSG00000005610 185.08 1922.73 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Tmsb10 ENSMUSG00000079523 185.08 1922.73 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
37. Npm1 ENSMUSG00000057113 171.20 1778.54 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
38. Rpl23 ENSMUSG00000071415 171.20 1778.54 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Cdk4 ENSMUSG00000006728 167.50 1740.10 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
40. Gm10800 ENSMUSG00000075014 165.65 1720.88 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
41. Banf1 ENSMUSG00000024844 163.80 1701.66 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
42. Ndufa12 ENSMUSG00000020022 161.95 1682.44 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
43. mt-Rnr2 ENSMUSG00000064339 153.62 1595.90 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
44. Gm9844 ENSMUSG00000091955 151.77 1576.69 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
45. Fkbp1a ENSMUSG00000032966 149.92 1557.47 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Actc1 ENSMUSG00000068614 145.29 1509.37 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
47. Acta2 ENSMUSG00000035783 144.37 1499.81 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
48. Chchd2 ENSMUSG00000070493 141.59 1470.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Paics ENSMUSG00000029247 138.81 1442.05 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
50. Grb10 ENSMUSG00000020176 136.04 1413.27 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
51. Rpl37 ENSMUSG00000041841 135.11 1403.61 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
52. Rpl32 ENSMUSG00000057841 134.19 1394.05 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
53. Col3a1 ENSMUSG00000026043 133.26 1384.39 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
54. Eef1b2 ENSMUSG00000025967 131.41 1365.17 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Hsp90ab1 ENSMUSG00000023944 131.41 1365.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
56. Rrm2 ENSMUSG00000020649 130.48 1355.51 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
57. Hnrnpa2b1 ENSMUSG00000004980 127.71 1326.73 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
58. Eif5a ENSMUSG00000078812 124.01 1288.30 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
59. Tecr ENSMUSG00000031708 124.01 1288.30 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
60. Tmsb4x ENSMUSG00000049775 124.01 1288.30 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
61. Crabp1 ENSMUSG00000032291 120.31 1249.86 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
62. Rps4x ENSMUSG00000031320 119.38 1240.20 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. Rpl41 ENSMUSG00000093674 117.53 1220.98 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
64. Eef2 ENSMUSG00000034994 114.75 1192.10 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
65. Rps3a1 ENSMUSG00000028081 114.75 1192.10 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
66. Atp5g3 ENSMUSG00000018770 113.83 1182.54 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
67. Kpnb1 ENSMUSG00000001440 112.90 1172.88 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
68. Rplp1 ENSMUSG00000007892 112.90 1172.88 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
69. Morf4l2 ENSMUSG00000031422 111.98 1163.32 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
70. Rps26 ENSMUSG00000025362 111.98 1163.32 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
71. Gm14586 ENSMUSG00000083621 111.05 1153.66 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
72. Hba-a2 ENSMUSG00000069917 109.20 1134.44 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
73. Hmgn1 ENSMUSG00000040681 107.35 1115.22 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
74. Fkbp4 ENSMUSG00000030357 105.50 1096.00 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
75. Trim28 ENSMUSG00000005566 104.57 1086.34 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Hbb-bh1 ENSMUSG00000052217 100.87 1047.90 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
77. Pabpc1 ENSMUSG00000022283 100.87 1047.90 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
78. Rps15 ENSMUSG00000063457 100.87 1047.90 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
79. Srsf3 ENSMUSG00000071172 99.95 1038.35 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
80. Ngfrap1 99.02 1028.68 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
81. Ran ENSMUSG00000029430 99.02 1028.68 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
82. Ywhae ENSMUSG00000020849 99.02 1028.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
83. H3f3b ENSMUSG00000016559 95.32 990.25 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
84. Hsp90aa1 ENSMUSG00000021270 95.32 990.25 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
85. Morf4l1 ENSMUSG00000062270 95.32 990.25 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
86. Rpl39-ps ENSMUSG00000036305 95.32 990.25 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
87. Jund ENSMUSG00000071076, ENSMUSG00000110974 94.39 980.58 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
88. Marcks ENSMUSG00000069662 94.39 980.58 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Rps5 ENSMUSG00000012848 91.62 951.81 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
90. Ywhaq ENSMUSG00000076432 91.62 951.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
91. Plagl1 ENSMUSG00000019817 89.77 932.59 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
92. Rpl8 ENSMUSG00000003970 89.77 932.59 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Ddx39b ENSMUSG00000019432 87.92 913.37 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
94. Gm10073 ENSMUSG00000060019 87.92 913.37 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
95. Tpm1 ENSMUSG00000032366 87.92 913.37 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
96. Hnrnpc ENSMUSG00000060373 86.99 903.71 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
97. Scd2 ENSMUSG00000025203 86.99 903.71 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
98. Ywhaz ENSMUSG00000022285 86.99 903.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
99. Gm8292 ENSMUSG00000100215 86.06 894.05 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
100. Pfn1 ENSMUSG00000018293 86.06 894.05 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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