Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s30.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3747.40 38935.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3586.01 37258.45 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2319.93 24103.95 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2122.23 22049.85 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 1983.44 20607.83 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1914.05 19886.87 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. H19 ENSMUSG00000000031 1274.95 13246.66 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1253.97 13028.68 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 945.73 9826.08 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Rnr2 ENSMUSG00000064339 863.42 8970.89 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Mdk ENSMUSG00000027239 801.28 8325.26 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Nd3 ENSMUSG00000064360 794.02 8249.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Nd2 ENSMUSG00000064345 772.23 8023.43 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. mt-Co3 ENSMUSG00000064358 710.91 7386.32 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Eef1a1 ENSMUSG00000037742 685.09 7118.05 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 677.82 7042.51 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 356.66 3705.68 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Nd5 ENSMUSG00000064367 319.55 3320.11 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Hmga2 ENSMUSG00000056758 316.32 3286.55 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Rpsa ENSMUSG00000032518 315.51 3278.13 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tuba1b ENSMUSG00000023004 287.27 2984.72 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Tubb5 ENSMUSG00000001525 270.32 2808.61 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Npm1 ENSMUSG00000057113 265.48 2758.32 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Cfl1 ENSMUSG00000056201 259.83 2699.62 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Nedd4 ENSMUSG00000032216 257.41 2674.48 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Pkm ENSMUSG00000032294 228.36 2372.65 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Cdkn1c ENSMUSG00000037664 223.52 2322.36 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
28. Tpt1 ENSMUSG00000060126 205.77 2137.94 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Eif4g2 ENSMUSG00000005610 202.54 2104.38 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Ubb ENSMUSG00000019505 196.08 2037.26 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Rpl23 ENSMUSG00000071415 190.44 1978.66 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
32. Rpl4 ENSMUSG00000032399 188.02 1953.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Chchd2 ENSMUSG00000070493 169.46 1760.68 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Rps20 ENSMUSG00000028234 164.61 1710.29 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Gm10800 ENSMUSG00000075014 159.77 1660.00 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
36. Hsp90ab1 ENSMUSG00000023944 156.54 1626.44 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Pbx1 ENSMUSG00000052534 154.93 1609.71 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
38. Ywhab ENSMUSG00000018326 150.90 1567.84 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
39. Grb10 ENSMUSG00000020176 146.05 1517.45 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Eef1b2 ENSMUSG00000025967 144.44 1500.72 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. Myl6 ENSMUSG00000090841 144.44 1500.72 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Atp5g3 ENSMUSG00000018770 142.02 1475.58 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Set ENSMUSG00000054766 140.41 1458.85 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
44. Tmsb4x ENSMUSG00000049775 139.60 1450.44 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
45. Col3a1 ENSMUSG00000026043 137.18 1425.29 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
46. Eif5a ENSMUSG00000078812 133.14 1383.32 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Meg3 ENSMUSG00000021268 131.53 1366.59 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
48. Pcbp1 ENSMUSG00000051695 129.92 1349.86 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Rps3a1 ENSMUSG00000028081 129.92 1349.86 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
50. Banf1 ENSMUSG00000024844 126.69 1316.30 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Hmgn1 ENSMUSG00000040681 125.88 1307.89 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
52. Ybx1 ENSMUSG00000028639 125.07 1299.47 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
53. Rps26 ENSMUSG00000025362 124.27 1291.16 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Rps4x ENSMUSG00000031320 122.65 1274.33 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Rpl18a ENSMUSG00000045128 116.20 1207.31 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
56. Paics ENSMUSG00000029247 113.78 1182.17 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
57. Trim28 ENSMUSG00000005566 109.74 1140.19 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
58. Ago2 ENSMUSG00000036698 108.13 1123.46 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. Ccnd2 ENSMUSG00000000184 107.32 1115.05 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
60. Hnrnpa2b1 ENSMUSG00000004980 106.52 1106.74 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
61. Rplp1 ENSMUSG00000007892 106.52 1106.74 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
62. Rpl37 ENSMUSG00000041841 104.90 1089.91 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
63. Hbb-y ENSMUSG00000052187 104.09 1081.49 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
64. Tmsb10 ENSMUSG00000079523 104.09 1081.49 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
65. Hnrnpc ENSMUSG00000060373 103.29 1073.18 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
66. Fscn1 ENSMUSG00000029581 101.67 1056.35 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
67. Pabpc1 ENSMUSG00000022283 101.67 1056.35 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
68. Ran ENSMUSG00000029430 100.06 1039.62 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
69. Rrm2 ENSMUSG00000020649 100.06 1039.62 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
70. U2af2 ENSMUSG00000030435 98.45 1022.89 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. 2810417H13Rik 97.64 1014.47 RIKEN cDNA 2810417H13 gene
72. H3f3b ENSMUSG00000016559 96.83 1006.06 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
73. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 96.83 1006.06 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
74. Rpl32 ENSMUSG00000057841 96.83 1006.06 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
75. Marcks ENSMUSG00000069662 95.22 989.33 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
76. Eef2 ENSMUSG00000034994 94.41 980.91 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
77. Hsp90aa1 ENSMUSG00000021270 94.41 980.91 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
78. Rps5 ENSMUSG00000012848 94.41 980.91 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
79. Tpm4 ENSMUSG00000031799 93.60 972.50 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
80. Tecr ENSMUSG00000031708 91.18 947.36 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Ywhaz ENSMUSG00000022285 91.18 947.36 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
82. Marcksl1 ENSMUSG00000047945 89.57 930.63 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
83. Peg3 ENSMUSG00000002265 89.57 930.63 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
84. Ywhae ENSMUSG00000020849 89.57 930.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
85. mt-Rnr1 ENSMUSG00000064337 89.57 930.63 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
86. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 87.96 913.90 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
87. Anp32b ENSMUSG00000028333 87.15 905.48 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
88. Fkbp1a ENSMUSG00000032966 86.34 897.07 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
89. Igfbp5 ENSMUSG00000026185 86.34 897.07 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
90. Gm5805 ENSMUSG00000061848 85.53 888.65 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
91. Rpl41 ENSMUSG00000093674 85.53 888.65 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
92. Rpl8 ENSMUSG00000003970 83.92 871.92 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Rps9 ENSMUSG00000006333 83.92 871.92 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
94. Tpm1 ENSMUSG00000032366 83.92 871.92 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
95. Actg1 ENSMUSG00000062825 82.31 855.20 actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906]
96. Actc1 ENSMUSG00000068614 81.50 846.78 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
97. Gm9844 ENSMUSG00000091955 81.50 846.78 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
98. Ngfrap1 80.69 838.36 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
99. Ddx5 ENSMUSG00000020719 79.89 830.05 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
100. Gm14586 ENSMUSG00000083621 79.89 830.05 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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