Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s3.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 5214.14 54176.03 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3772.59 39198.02 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2637.74 27406.68 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2545.73 26450.68 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2300.36 23901.23 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Co1 ENSMUSG00000064351 2116.33 21989.12 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. mt-Nd1 ENSMUSG00000064341 1962.97 20395.68 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Rnr2 ENSMUSG00000064339 1594.91 16571.46 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd3 ENSMUSG00000064360 1012.16 10516.56 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 920.14 9560.45 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Gm10800 ENSMUSG00000075014 889.47 9241.78 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
12. mt-Nd2 ENSMUSG00000064345 858.80 8923.12 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Eef1a1 ENSMUSG00000037742 552.09 5736.33 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Gm13340 ENSMUSG00000083563 552.09 5736.33 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
15. Tuba1b ENSMUSG00000023004 490.74 5098.89 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
16. mt-Nd5 ENSMUSG00000064367 490.74 5098.89 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. Actb ENSMUSG00000029580 460.07 4780.23 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
18. H19 ENSMUSG00000000031 398.73 4142.89 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Pkm ENSMUSG00000032294 368.06 3824.22 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Mdk ENSMUSG00000027239 337.39 3505.55 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Cfl1 ENSMUSG00000056201 306.71 3186.78 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Rpl4 ENSMUSG00000032399 276.04 2868.11 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
23. Rps20 ENSMUSG00000028234 276.04 2868.11 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
24. Gm17132 ENSMUSG00000061331 245.37 2549.45 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
25. Grb10 ENSMUSG00000020176 214.70 2230.78 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
26. Lamp1 ENSMUSG00000031447 214.70 2230.78 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
27. Rpsa ENSMUSG00000032518 214.70 2230.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Tubb5 ENSMUSG00000001525 214.70 2230.78 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Cltc ENSMUSG00000047126 184.03 1912.11 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
30. Hbb-y ENSMUSG00000052187 184.03 1912.11 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
31. Igf2bp2 ENSMUSG00000033581 184.03 1912.11 insulin-like growth factor 2 mRNA binding protein 2 [Source:MGI Symbol;Acc:MGI:1890358]
32. Npm1 ENSMUSG00000057113 184.03 1912.11 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
33. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 184.03 1912.11 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
34. Snx3 ENSMUSG00000019804 184.03 1912.11 sorting nexin 3 [Source:MGI Symbol;Acc:MGI:1860188]
35. U2af2 ENSMUSG00000030435 184.03 1912.11 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
36. Anp32b ENSMUSG00000028333 153.36 1593.44 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
37. Hnrnpc ENSMUSG00000060373 153.36 1593.44 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Igf2 ENSMUSG00000048583 153.36 1593.44 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
39. Myl6 ENSMUSG00000090841 153.36 1593.44 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
40. Nono ENSMUSG00000031311 153.36 1593.44 non-POU-domain-containing, octamer binding protein [Source:MGI Symbol;Acc:MGI:1855692]
41. Rpl23 ENSMUSG00000071415 153.36 1593.44 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Tpt1 ENSMUSG00000060126 153.36 1593.44 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
43. Tuba1a ENSMUSG00000072235 153.36 1593.44 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
44. mt-Rnr1 ENSMUSG00000064337 153.36 1593.44 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
45. Atp5g3 ENSMUSG00000018770 122.69 1274.78 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Banf1 ENSMUSG00000024844 122.69 1274.78 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Caprin1 ENSMUSG00000027184 122.69 1274.78 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
48. Cdk1 ENSMUSG00000019942 122.69 1274.78 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
49. Ddah2 ENSMUSG00000007039 122.69 1274.78 dimethylarginine dimethylaminohydrolase 2 [Source:MGI Symbol;Acc:MGI:1859016]
50. Eef1b2 ENSMUSG00000025967 122.69 1274.78 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Eif4g2 ENSMUSG00000005610 122.69 1274.78 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
52. Elavl1 ENSMUSG00000040028 122.69 1274.78 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Source:MGI Symbol;Acc:MGI:1100851]
53. Gm13936 ENSMUSG00000085444 122.69 1274.78 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
54. Gm17555 ENSMUSG00000090353 122.69 1274.78 predicted gene, 17555 [Source:MGI Symbol;Acc:MGI:4937189]
55. Gm8292 ENSMUSG00000100215 122.69 1274.78 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
56. Hba-a1 ENSMUSG00000069919 122.69 1274.78 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
57. Hnrnpa2b1 ENSMUSG00000004980 122.69 1274.78 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
58. Hsp90aa1 ENSMUSG00000021270 122.69 1274.78 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Hsph1 ENSMUSG00000029657 122.69 1274.78 heat shock 105kDa/110kDa protein 1 [Source:MGI Symbol;Acc:MGI:105053]
60. Igfbp4 ENSMUSG00000017493 122.69 1274.78 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
61. Nedd4 ENSMUSG00000032216 122.69 1274.78 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
62. Pcbp1 ENSMUSG00000051695 122.69 1274.78 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
63. Pebp1 ENSMUSG00000032959 122.69 1274.78 phosphatidylethanolamine binding protein 1 [Source:MGI Symbol;Acc:MGI:1344408]
64. Pfn1 ENSMUSG00000018293 122.69 1274.78 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
65. Prdx1 ENSMUSG00000028691 122.69 1274.78 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
66. Prkacb ENSMUSG00000005034 122.69 1274.78 protein kinase, cAMP dependent, catalytic, beta [Source:MGI Symbol;Acc:MGI:97594]
67. Ran ENSMUSG00000029430 122.69 1274.78 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Rpl28-ps1 ENSMUSG00000058603 122.69 1274.78 ribosomal protein L28, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3705349]
69. Rpl32 ENSMUSG00000057841 122.69 1274.78 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
70. Slc2a3 ENSMUSG00000003153 122.69 1274.78 solute carrier family 2 (facilitated glucose transporter), member 3 [Source:MGI Symbol;Acc:MGI:95757]
71. Snrpb ENSMUSG00000027404 122.69 1274.78 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:98342]
72. Srsf7 ENSMUSG00000024097 122.69 1274.78 serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232]
73. Tecr ENSMUSG00000031708 122.69 1274.78 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
74. Tmsb10 ENSMUSG00000079523 122.69 1274.78 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
75. Tpm4 ENSMUSG00000031799 122.69 1274.78 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
76. Ube2e3 ENSMUSG00000027011 122.69 1274.78 ubiquitin-conjugating enzyme E2E 3 [Source:MGI Symbol;Acc:MGI:107412]
77. Ywhaz ENSMUSG00000022285 122.69 1274.78 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
78. 1600002H07Rik 92.01 956.00 RIKEN cDNA 1600002H07 gene, transcript variant X2
79. 2810417H13Rik 92.01 956.00 RIKEN cDNA 2810417H13 gene
80. Ago2 ENSMUSG00000036698 92.01 956.00 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
81. Ankrd46 ENSMUSG00000048307 92.01 956.00 ankyrin repeat domain 46 [Source:MGI Symbol;Acc:MGI:1916089]
82. Atp6v1b2 ENSMUSG00000006273 92.01 956.00 ATPase, H+ transporting, lysosomal V1 subunit B2 [Source:MGI Symbol;Acc:MGI:109618]
83. Atxn10 ENSMUSG00000016541 92.01 956.00 ataxin 10 [Source:MGI Symbol;Acc:MGI:1859293]
84. C1qbp ENSMUSG00000018446 92.01 956.00 complement component 1, q subcomponent binding protein [Source:MGI Symbol;Acc:MGI:1194505]
85. C230081A13Rik C230081A13Rik 92.01 956.00
86. Cacybp ENSMUSG00000014226 92.01 956.00 calcyclin binding protein [Source:MGI Symbol;Acc:MGI:1270839]
87. Calm1 ENSMUSG00000001175 92.01 956.00 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
88. Cdk4 ENSMUSG00000006728 92.01 956.00 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
89. Chd3 ENSMUSG00000018474 92.01 956.00 chromodomain helicase DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1344395]
90. Cnn3 ENSMUSG00000053931 92.01 956.00 calponin 3, acidic [Source:MGI Symbol;Acc:MGI:1919244]
91. Crabp1 ENSMUSG00000032291 92.01 956.00 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
92. Cyb5r4 ENSMUSG00000032872 92.01 956.00 cytochrome b5 reductase 4 [Source:MGI Symbol;Acc:MGI:2386848]
93. Dlgap4 ENSMUSG00000061689 92.01 956.00 DLG associated protein 4 [Source:MGI Symbol;Acc:MGI:2138865]
94. Dtnbp1 ENSMUSG00000057531 92.01 956.00 dystrobrevin binding protein 1 [Source:MGI Symbol;Acc:MGI:2137586]
95. Eef2 ENSMUSG00000034994 92.01 956.00 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
96. Eif5 ENSMUSG00000021282 92.01 956.00 eukaryotic translation initiation factor 5 [Source:MGI Symbol;Acc:MGI:95309]
97. Eif5a ENSMUSG00000078812 92.01 956.00 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
98. Erdr1 92.01 956.00 erythroid differentiation regulator 1, transcript variant 1, non-coding
99. Ezr ENSMUSG00000052397 92.01 956.00 ezrin [Source:MGI Symbol;Acc:MGI:98931]
100. Fgfr2 ENSMUSG00000030849 92.01 956.00 fibroblast growth factor receptor 2 [Source:MGI Symbol;Acc:MGI:95523]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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