Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s29.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4055.43 42131.64 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3855.01 40049.48 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2511.82 26095.16 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1820.55 18913.59 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. H19 ENSMUSG00000000031 1645.45 17094.49 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
6. mt-Nd1 ENSMUSG00000064341 1593.19 16551.56 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co2 ENSMUSG00000064354 1182.63 12286.28 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Co1 ENSMUSG00000064351 1060.87 11021.32 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 865.83 8995.06 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Eef1a1 ENSMUSG00000037742 850.74 8838.29 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd3 ENSMUSG00000064360 783.93 8144.21 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Igf2 ENSMUSG00000048583 734.36 7629.23 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Mdk ENSMUSG00000027239 724.13 7522.95 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Co3 ENSMUSG00000064358 636.31 6610.59 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. mt-Nd2 ENSMUSG00000064345 508.61 5283.92 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Hbb-y ENSMUSG00000052187 414.33 4304.45 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Tuba1b ENSMUSG00000023004 324.35 3369.65 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
18. Tubb5 ENSMUSG00000001525 324.35 3369.65 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
19. Gm13340 ENSMUSG00000083563 303.34 3151.38 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Rpsa ENSMUSG00000032518 299.56 3112.11 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Cfl1 ENSMUSG00000056201 293.64 3050.61 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Pkm ENSMUSG00000032294 291.48 3028.17 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Tpt1 ENSMUSG00000060126 272.09 2826.73 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
24. Ubb ENSMUSG00000019505 233.29 2423.64 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Rpl18a ENSMUSG00000045128 230.06 2390.08 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
26. Hba-a1 ENSMUSG00000069919 229.52 2384.47 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Hmga2 ENSMUSG00000056758 220.90 2294.92 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
28. mt-Nd5 ENSMUSG00000064367 210.13 2183.03 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
29. Nedd4 ENSMUSG00000032216 207.43 2154.98 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Rpl4 ENSMUSG00000032399 201.51 2093.48 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Hba-x ENSMUSG00000055609 198.81 2065.43 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Npm1 ENSMUSG00000057113 198.81 2065.43 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
33. Eif4g2 ENSMUSG00000005610 191.27 1987.09 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Cdkn1c ENSMUSG00000037664 186.42 1936.71 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
35. Rpl23 ENSMUSG00000071415 186.42 1936.71 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Tmsb10 ENSMUSG00000079523 181.03 1880.71 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
37. Chchd2 ENSMUSG00000070493 177.26 1841.54 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Rps20 ENSMUSG00000028234 174.03 1807.99 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Col3a1 ENSMUSG00000026043 170.26 1768.82 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
40. Rpl37 ENSMUSG00000041841 166.48 1729.55 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
41. Myl6 ENSMUSG00000090841 154.63 1606.44 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Paics ENSMUSG00000029247 147.09 1528.11 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
43. Hnrnpa2b1 ENSMUSG00000004980 144.39 1500.06 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
44. Hsp90ab1 ENSMUSG00000023944 140.08 1455.28 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
45. Gm9844 ENSMUSG00000091955 135.77 1410.51 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
46. Rps4x ENSMUSG00000031320 135.77 1410.51 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Eef1b2 ENSMUSG00000025967 133.08 1382.56 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Cdk4 ENSMUSG00000006728 132.54 1376.95 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
49. Eef2 ENSMUSG00000034994 127.15 1320.95 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
50. H3f3b ENSMUSG00000016559 125.00 1298.62 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
51. Rplp1 ENSMUSG00000007892 121.77 1265.06 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
52. Hmgn1 ENSMUSG00000040681 121.23 1259.45 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
53. Tmsb4x ENSMUSG00000049775 121.23 1259.45 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
54. Rpl41 ENSMUSG00000093674 119.07 1237.01 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
55. mt-Rnr2 ENSMUSG00000064339 118.53 1231.40 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
56. Grb10 ENSMUSG00000020176 117.46 1220.29 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
57. Pcbp1 ENSMUSG00000051695 116.38 1209.07 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
58. Rpl32 ENSMUSG00000057841 116.38 1209.07 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
59. Marcks ENSMUSG00000069662 115.84 1203.46 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
60. Banf1 ENSMUSG00000024844 115.30 1197.85 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
61. Rps5 ENSMUSG00000012848 115.30 1197.85 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
62. Trim28 ENSMUSG00000005566 115.30 1197.85 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
63. Ywhab ENSMUSG00000018326 114.76 1192.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
64. Rrm2 ENSMUSG00000020649 114.22 1186.63 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
65. Eif5a ENSMUSG00000078812 113.14 1175.41 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
66. Rps26 ENSMUSG00000025362 110.99 1153.07 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
67. Rps3a1 ENSMUSG00000028081 109.91 1141.85 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
68. Tecr ENSMUSG00000031708 108.83 1130.63 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
69. Hsp90aa1 ENSMUSG00000021270 108.30 1125.12 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
70. Atp5g3 ENSMUSG00000018770 107.22 1113.90 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
71. Ddx5 ENSMUSG00000020719 107.22 1113.90 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
72. Fkbp1a ENSMUSG00000032966 105.06 1091.46 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
73. Rps9 ENSMUSG00000006333 100.21 1041.08 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
74. Ndufa12 ENSMUSG00000020022 99.68 1035.57 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
75. Lamp1 ENSMUSG00000031447 98.06 1018.74 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
76. U2af2 ENSMUSG00000030435 98.06 1018.74 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
77. Morf4l2 ENSMUSG00000031422 95.36 990.69 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
78. Hba-a2 ENSMUSG00000069917 94.83 985.18 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
79. Hnrnpc ENSMUSG00000060373 93.21 968.35 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
80. Ywhaz ENSMUSG00000022285 93.21 968.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
81. Adprh ENSMUSG00000002844 92.67 962.74 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
82. Peg3 ENSMUSG00000002265 92.13 957.13 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
83. Plagl1 ENSMUSG00000019817 92.13 957.13 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 92.13 957.13 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Kpnb1 ENSMUSG00000001440 91.59 951.52 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
86. Ran ENSMUSG00000029430 91.59 951.52 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
87. Tpm1 ENSMUSG00000032366 91.05 945.91 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
88. Fscn1 ENSMUSG00000029581 90.52 940.41 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
89. Rpl39-ps ENSMUSG00000036305 89.44 929.19 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
90. Maged1 ENSMUSG00000025151 88.90 923.58 melanoma antigen, family D, 1 [Source:MGI Symbol;Acc:MGI:1930187]
91. Morf4l1 ENSMUSG00000062270 88.36 917.97 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
92. Ywhae ENSMUSG00000020849 88.36 917.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
93. Srsf3 ENSMUSG00000071172 87.28 906.75 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
94. Gm14586 ENSMUSG00000083621 86.74 901.14 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
95. Hbb-bh1 ENSMUSG00000052217 84.59 878.80 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
96. Scd2 ENSMUSG00000025203 84.59 878.80 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
97. Hnrnph1 ENSMUSG00000007850 84.05 873.19 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
98. Igfbp5 ENSMUSG00000026185 84.05 873.19 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
99. Cd24a ENSMUSG00000047139 82.97 861.97 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
100. Pabpc1 ENSMUSG00000022283 82.97 861.97 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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