Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s28.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4347.17 45164.76 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3459.68 35944.22 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2948.25 30630.73 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2371.64 24640.06 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2263.84 23520.08 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2213.70 22999.15 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1391.40 14455.90 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Nd3 ENSMUSG00000064360 1276.07 13257.68 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Co1 ENSMUSG00000064351 1273.57 13231.71 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Co3 ENSMUSG00000064358 965.20 10027.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Rnr2 ENSMUSG00000064339 827.32 8595.41 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. Eef1a1 ENSMUSG00000037742 774.67 8048.40 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Actb ENSMUSG00000029580 764.64 7944.20 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Nd2 ENSMUSG00000064345 749.60 7787.94 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Igf2 ENSMUSG00000048583 631.77 6563.75 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Hbb-y ENSMUSG00000052187 481.35 5000.97 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Mdk ENSMUSG00000027239 463.80 4818.63 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Hmga2 ENSMUSG00000056758 403.63 4193.50 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Gm13340 ENSMUSG00000083563 348.48 3620.52 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Tubb5 ENSMUSG00000001525 323.41 3360.06 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
21. mt-Nd5 ENSMUSG00000064367 300.84 3125.57 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Npm1 ENSMUSG00000057113 293.32 3047.44 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Tuba1b ENSMUSG00000023004 288.31 2995.39 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Rpsa ENSMUSG00000032518 273.26 2839.02 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Tpt1 ENSMUSG00000060126 245.69 2552.59 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Rpl4 ENSMUSG00000032399 230.65 2396.33 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Nedd4 ENSMUSG00000032216 225.63 2344.17 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Hba-a1 ENSMUSG00000069919 205.58 2135.87 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
29. Rpl23 ENSMUSG00000071415 198.05 2057.63 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
30. Eif4g2 ENSMUSG00000005610 193.04 2005.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Cfl1 ENSMUSG00000056201 188.03 1953.53 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Pkm ENSMUSG00000032294 185.52 1927.45 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Ubb ENSMUSG00000019505 175.49 1823.25 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Paics ENSMUSG00000029247 170.48 1771.20 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
35. Hba-x ENSMUSG00000055609 160.45 1666.99 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
36. Rps26 ENSMUSG00000025362 160.45 1666.99 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Rps20 ENSMUSG00000028234 155.44 1614.94 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Myl6 ENSMUSG00000090841 150.42 1562.78 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
39. Chchd2 ENSMUSG00000070493 147.91 1536.71 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. mt-Rnr1 ENSMUSG00000064337 147.91 1536.71 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
41. Col3a1 ENSMUSG00000026043 145.41 1510.73 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
42. Hnrnpc ENSMUSG00000060373 140.39 1458.58 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Pbx1 ENSMUSG00000052534 140.39 1458.58 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
44. Cdkn1c ENSMUSG00000037664 137.89 1432.60 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
45. Pabpc1 ENSMUSG00000022283 137.89 1432.60 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
46. Rpl18a ENSMUSG00000045128 137.89 1432.60 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Set ENSMUSG00000054766 137.89 1432.60 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
48. Pcbp1 ENSMUSG00000051695 135.38 1406.53 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Rpl41 ENSMUSG00000093674 135.38 1406.53 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
50. Eef1b2 ENSMUSG00000025967 130.36 1354.37 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Hsp90ab1 ENSMUSG00000023944 130.36 1354.37 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
52. Grb10 ENSMUSG00000020176 127.86 1328.40 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Hnrnpa2b1 ENSMUSG00000004980 127.86 1328.40 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
54. Marcks ENSMUSG00000069662 127.86 1328.40 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
55. Peg3 ENSMUSG00000002265 127.86 1328.40 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
56. Rps4x ENSMUSG00000031320 125.35 1302.32 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Ywhab ENSMUSG00000018326 122.84 1276.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 120.34 1250.27 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
59. Hsp90aa1 ENSMUSG00000021270 117.83 1224.19 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. H3f3b ENSMUSG00000016559 112.82 1172.14 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
61. Rplp1 ENSMUSG00000007892 112.82 1172.14 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
62. Tmsb10 ENSMUSG00000079523 112.82 1172.14 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
63. Ywhae ENSMUSG00000020849 112.82 1172.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
64. Gm9844 ENSMUSG00000091955 110.31 1146.06 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
65. Ndufa12 ENSMUSG00000020022 105.29 1093.91 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
66. Rps5 ENSMUSG00000012848 105.29 1093.91 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Cd24a ENSMUSG00000047139 102.79 1067.93 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
68. Hmgn1 ENSMUSG00000040681 102.79 1067.93 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Srsf3 ENSMUSG00000071172 102.79 1067.93 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
70. Scd2 ENSMUSG00000025203 100.28 1041.86 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
71. Cdk4 ENSMUSG00000006728 97.77 1015.78 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Rpl37 ENSMUSG00000041841 97.77 1015.78 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
73. Banf1 ENSMUSG00000024844 95.27 989.80 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
74. Ran ENSMUSG00000029430 95.27 989.80 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
75. Sub1 ENSMUSG00000022205 95.27 989.80 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
76. Wbp5 95.27 989.80 WW domain binding protein 5
77. Gm5805 ENSMUSG00000061848 92.76 963.73 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
78. Rrm2 ENSMUSG00000020649 92.76 963.73 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
79. U2af2 ENSMUSG00000030435 92.76 963.73 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
80. Atp5g3 ENSMUSG00000018770 90.25 937.65 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
81. Morf4l1 ENSMUSG00000062270 90.25 937.65 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
82. Tmsb4x ENSMUSG00000049775 90.25 937.65 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
83. Ccnd2 ENSMUSG00000000184 87.75 911.68 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
84. Gm14303 ENSMUSG00000081344 87.75 911.68 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
85. Rpl39-ps ENSMUSG00000036305 87.75 911.68 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
86. Rps3a1 ENSMUSG00000028081 87.75 911.68 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
87. Col1a1 ENSMUSG00000001506 85.24 885.60 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
88. Ddx5 ENSMUSG00000020719 85.24 885.60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Gm8292 ENSMUSG00000100215 85.24 885.60 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
90. Rpl32 ENSMUSG00000057841 85.24 885.60 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
91. Serbp1 ENSMUSG00000036371 85.24 885.60 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
92. Sox9 ENSMUSG00000000567 85.24 885.60 SRY (sex determining region Y)-box 9 [Source:MGI Symbol;Acc:MGI:98371]
93. Tmpo ENSMUSG00000019961 82.73 859.52 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
94. Top2a ENSMUSG00000020914 82.73 859.52 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
95. Trim28 ENSMUSG00000005566 82.73 859.52 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
96. Ybx1 ENSMUSG00000028639 82.73 859.52 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
97. Anp32b ENSMUSG00000028333 80.22 833.44 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
98. Gm5963 ENSMUSG00000052192 80.22 833.44 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
99. Hbb-bh1 ENSMUSG00000052217 80.22 833.44 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
100. Hnrnpk ENSMUSG00000021546 80.22 833.44 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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