Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s27.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4189.89 43531.02 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3904.80 40569.07 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2386.66 24796.29 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2258.40 23463.73 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 2051.38 21312.89 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2026.29 21052.22 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1441.47 14976.21 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1348.77 14013.10 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 927.76 9639.00 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd3 ENSMUSG00000064360 803.68 8349.86 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Mdk ENSMUSG00000027239 797.41 8284.72 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Nd2 ENSMUSG00000064345 760.47 7900.93 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Eef1a1 ENSMUSG00000037742 711.68 7394.03 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Co3 ENSMUSG00000064358 627.33 6517.67 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Igf2 ENSMUSG00000048583 624.55 6488.79 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. mt-Rnr2 ENSMUSG00000064339 525.57 5460.43 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Gm13340 ENSMUSG00000083563 373.61 3881.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 368.73 3830.93 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Nd5 ENSMUSG00000064367 305.30 3171.93 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Hbb-y ENSMUSG00000052187 269.75 2802.58 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Tuba1b ENSMUSG00000023004 267.66 2780.86 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Hmga2 ENSMUSG00000056758 247.45 2570.89 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Npm1 ENSMUSG00000057113 245.36 2549.18 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 228.63 2375.36 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Gm10800 ENSMUSG00000075014 223.75 2324.66 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
26. Tubb5 ENSMUSG00000001525 223.75 2324.66 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Cfl1 ENSMUSG00000056201 216.08 2244.97 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Tpt1 ENSMUSG00000060126 200.05 2078.43 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Hsp90ab1 ENSMUSG00000023944 199.35 2071.15 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Ubb ENSMUSG00000019505 193.08 2006.01 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Eif4g2 ENSMUSG00000005610 186.81 1940.87 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Rpl4 ENSMUSG00000032399 185.41 1926.32 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Pkm ENSMUSG00000032294 184.02 1911.88 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Col3a1 ENSMUSG00000026043 179.84 1868.45 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
35. Set ENSMUSG00000054766 157.53 1636.66 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Hba-a1 ENSMUSG00000069919 154.05 1600.51 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
37. Chchd2 ENSMUSG00000070493 148.47 1542.53 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Eif5a ENSMUSG00000078812 148.47 1542.53 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Hba-x ENSMUSG00000055609 147.77 1535.26 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
40. Rpl23 ENSMUSG00000071415 144.29 1499.11 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Eef1b2 ENSMUSG00000025967 143.59 1491.83 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Grb10 ENSMUSG00000020176 143.59 1491.83 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Ywhab ENSMUSG00000018326 140.80 1462.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
44. Rrm2 ENSMUSG00000020649 137.32 1426.69 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
45. Cdkn1c ENSMUSG00000037664 136.62 1419.42 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
46. Pcbp1 ENSMUSG00000051695 136.62 1419.42 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. U2af2 ENSMUSG00000030435 134.53 1397.70 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
48. Rps20 ENSMUSG00000028234 132.44 1375.99 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Hnrnpc ENSMUSG00000060373 131.74 1368.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Ybx1 ENSMUSG00000028639 129.65 1347.00 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Rps26 ENSMUSG00000025362 128.95 1339.73 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. mt-Rnr1 ENSMUSG00000064337 128.25 1332.46 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
53. Rpl18a ENSMUSG00000045128 124.77 1296.30 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Atp5g3 ENSMUSG00000018770 121.98 1267.32 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
55. Pabpc1 ENSMUSG00000022283 121.28 1260.04 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Ago2 ENSMUSG00000036698 119.19 1238.33 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
57. Banf1 ENSMUSG00000024844 119.19 1238.33 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Hnrnpa2b1 ENSMUSG00000004980 112.92 1173.19 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
59. Myl6 ENSMUSG00000090841 110.13 1144.20 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. Trim28 ENSMUSG00000005566 110.13 1144.20 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
61. Peg3 ENSMUSG00000002265 109.43 1136.93 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
62. Paics ENSMUSG00000029247 108.74 1129.76 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Tmsb4x ENSMUSG00000049775 107.34 1115.21 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
64. Rps3a1 ENSMUSG00000028081 106.65 1108.04 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
65. Rplp1 ENSMUSG00000007892 105.25 1093.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Marcks ENSMUSG00000069662 104.56 1086.33 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
67. Hmgn1 ENSMUSG00000040681 103.16 1071.78 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
68. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 103.16 1071.78 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
69. Ccnd2 ENSMUSG00000000184 101.07 1050.07 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
70. Anp32b ENSMUSG00000028333 100.37 1042.80 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
71. Rps5 ENSMUSG00000012848 99.68 1035.63 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Gm5805 ENSMUSG00000061848 98.98 1028.36 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
73. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 98.98 1028.36 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
74. Hsp90aa1 ENSMUSG00000021270 98.28 1021.08 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
75. H3f3b ENSMUSG00000016559 97.59 1013.92 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
76. Rps4x ENSMUSG00000031320 96.89 1006.64 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
77. Fkbp1a ENSMUSG00000032966 96.19 999.37 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
78. Fscn1 ENSMUSG00000029581 96.19 999.37 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
79. Rps9 ENSMUSG00000006333 95.49 992.10 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
80. Ywhae ENSMUSG00000020849 94.80 984.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
81. Tmsb10 ENSMUSG00000079523 92.01 955.94 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
82. Col2a1 ENSMUSG00000022483 90.61 941.40 collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
83. Gm9844 ENSMUSG00000091955 90.61 941.40 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
84. Ywhaz ENSMUSG00000022285 90.61 941.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
85. Gpc3 ENSMUSG00000055653 89.22 926.95 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
86. Meg3 ENSMUSG00000021268 89.22 926.95 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
87. 2810417H13Rik 87.83 912.51 RIKEN cDNA 2810417H13 gene
88. Marcksl1 ENSMUSG00000047945 87.13 905.24 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
89. Pbx1 ENSMUSG00000052534 85.74 890.80 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
90. Ddx5 ENSMUSG00000020719 84.34 876.25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
91. Kpnb1 ENSMUSG00000001440 84.34 876.25 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
92. Rpl32 ENSMUSG00000057841 84.34 876.25 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
93. Morf4l1 ENSMUSG00000062270 83.64 868.98 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
94. Ran ENSMUSG00000029430 82.95 861.81 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
95. Cdk4 ENSMUSG00000006728 82.25 854.54 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
96. Gm14303 ENSMUSG00000081344 82.25 854.54 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
97. Morf4l2 ENSMUSG00000031422 81.55 847.27 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
98. Tsc22d1 ENSMUSG00000022010 81.55 847.27 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
99. Tcf7l1 ENSMUSG00000055799 78.77 818.38 transcription factor 7 like 1 (T cell specific, HMG box) [Source:MGI Symbol;Acc:MGI:1202876]
100. Rpl37 ENSMUSG00000041841 78.07 811.11 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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