Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s26.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3945.21 40990.40 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3649.86 37921.74 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2553.03 26525.77 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2169.60 22541.96 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2079.18 21602.51 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 1894.22 19680.79 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. H19 ENSMUSG00000000031 1497.29 15556.72 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1385.14 14391.49 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd3 ENSMUSG00000064360 899.55 9346.25 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 839.07 8717.87 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Igf2 ENSMUSG00000048583 785.05 8156.60 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
12. Actb ENSMUSG00000029580 728.09 7564.79 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Mdk ENSMUSG00000027239 718.11 7461.10 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Eef1a1 ENSMUSG00000037742 679.36 7058.49 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Nd2 ENSMUSG00000064345 651.17 6765.60 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. mt-Rnr2 ENSMUSG00000064339 466.21 4843.88 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Gm13340 ENSMUSG00000083563 389.88 4050.82 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 345.84 3593.25 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Tuba1b ENSMUSG00000023004 316.49 3288.30 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Cfl1 ENSMUSG00000056201 285.37 2964.97 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Hbb-y ENSMUSG00000052187 280.67 2916.14 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
22. Tubb5 ENSMUSG00000001525 255.42 2653.79 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Npm1 ENSMUSG00000057113 253.66 2635.51 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 240.74 2501.27 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. mt-Nd5 ENSMUSG00000064367 233.11 2421.99 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. Ubb ENSMUSG00000019505 228.41 2373.16 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Hba-x ENSMUSG00000055609 213.73 2220.64 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
28. Pkm ENSMUSG00000032294 210.21 2184.06 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Hmga2 ENSMUSG00000056758 207.27 2153.52 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Tpt1 ENSMUSG00000060126 203.16 2110.82 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Eif5a ENSMUSG00000078812 191.42 1988.84 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
32. Hba-a1 ENSMUSG00000069919 191.42 1988.84 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
33. Rpl4 ENSMUSG00000032399 190.24 1976.58 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Hsp90ab1 ENSMUSG00000023944 184.96 1921.72 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Rpl23 ENSMUSG00000071415 181.44 1885.15 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Eif4g2 ENSMUSG00000005610 179.67 1866.76 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Col3a1 ENSMUSG00000026043 172.63 1793.61 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
38. Chchd2 ENSMUSG00000070493 165.58 1720.36 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Rps26 ENSMUSG00000025362 160.30 1665.50 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
40. Gm10800 ENSMUSG00000075014 158.54 1647.22 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
41. Eef1b2 ENSMUSG00000025967 152.66 1586.12 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Rps20 ENSMUSG00000028234 149.73 1555.68 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Grb10 ENSMUSG00000020176 147.38 1531.27 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Cdkn1c ENSMUSG00000037664 146.21 1519.11 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
45. Hnrnpa2b1 ENSMUSG00000004980 137.99 1433.70 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
46. Tmsb4x ENSMUSG00000049775 135.64 1409.29 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
47. Ran ENSMUSG00000029430 134.46 1397.03 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
48. Rplp1 ENSMUSG00000007892 133.29 1384.87 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. Pcbp1 ENSMUSG00000051695 126.83 1317.75 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
50. Atp5g3 ENSMUSG00000018770 125.07 1299.47 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Rpl18a ENSMUSG00000045128 125.07 1299.47 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Paics ENSMUSG00000029247 124.48 1293.34 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
53. Hsp90aa1 ENSMUSG00000021270 120.96 1256.76 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Hnrnpc ENSMUSG00000060373 118.61 1232.35 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 117.43 1220.09 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
56. Tmsb10 ENSMUSG00000079523 117.43 1220.09 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
57. Ywhab ENSMUSG00000018326 117.43 1220.09 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Ybx1 ENSMUSG00000028639 115.67 1201.80 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
59. Gm14303 ENSMUSG00000081344 112.15 1165.23 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
60. Rrm2 ENSMUSG00000020649 112.15 1165.23 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
61. Trim28 ENSMUSG00000005566 110.98 1153.07 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. Fscn1 ENSMUSG00000029581 110.39 1146.94 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
63. Banf1 ENSMUSG00000024844 109.80 1140.81 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
64. Pax1 ENSMUSG00000037034 109.21 1134.68 paired box 1 [Source:MGI Symbol;Acc:MGI:97485]
65. U2af2 ENSMUSG00000030435 108.04 1122.53 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
66. Rps3a1 ENSMUSG00000028081 107.45 1116.40 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
67. Hmgn1 ENSMUSG00000040681 106.87 1110.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
68. Rpl32 ENSMUSG00000057841 106.87 1110.37 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
69. Rps4x ENSMUSG00000031320 106.28 1104.24 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
70. Cdk4 ENSMUSG00000006728 104.52 1085.95 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
71. Hnrnpa0 ENSMUSG00000007836 103.93 1079.82 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
72. Marcks ENSMUSG00000069662 100.99 1049.28 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
73. Rpl8 ENSMUSG00000003970 100.41 1043.25 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Set ENSMUSG00000054766 100.41 1043.25 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
75. Pabpc1 ENSMUSG00000022283 99.82 1037.12 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
76. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.23 1030.99 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
77. Col2a1 ENSMUSG00000022483 98.06 1018.84 collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
78. Gpc3 ENSMUSG00000055653 97.47 1012.71 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
79. Myl6 ENSMUSG00000090841 97.47 1012.71 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
80. Ndufa12 ENSMUSG00000020022 93.95 976.13 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
81. Morf4l2 ENSMUSG00000031422 93.36 970.00 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
82. Gm9844 ENSMUSG00000091955 91.60 951.72 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
83. Gm15459 ENSMUSG00000100801 91.01 945.59 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
84. Hba-a2 ENSMUSG00000069917 90.42 939.46 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
85. Hnrnpk ENSMUSG00000021546 89.84 933.43 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
86. Ywhaz ENSMUSG00000022285 89.84 933.43 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
87. Anp32b ENSMUSG00000028333 89.25 927.30 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
88. Fkbp1a ENSMUSG00000032966 88.66 921.17 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
89. Gm5805 ENSMUSG00000061848 88.08 915.14 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
90. Pfn1 ENSMUSG00000018293 88.08 915.14 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
91. Rps5 ENSMUSG00000012848 88.08 915.14 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
92. Sec31a ENSMUSG00000035325 86.90 902.88 Sec31 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1916412]
93. Ywhae ENSMUSG00000020849 86.31 896.75 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
94. Cox8a ENSMUSG00000035885 85.14 884.60 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
95. Ddx5 ENSMUSG00000020719 82.79 860.18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
96. Hnrnph1 ENSMUSG00000007850 82.79 860.18 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
97. Peg3 ENSMUSG00000002265 82.79 860.18 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
98. Nnat ENSMUSG00000067786 81.62 848.02 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
99. Rpl37 ENSMUSG00000041841 81.62 848.02 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
100. mt-Rnr1 ENSMUSG00000064337 81.03 841.89 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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