Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s25.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4493.14 46682.64 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3830.19 39794.75 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2187.57 22728.32 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2044.73 21244.25 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1982.63 20599.05 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1776.14 18453.67 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1228.08 12759.45 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1082.14 11243.17 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 895.83 9307.46 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Rnr2 ENSMUSG00000064339 824.41 8565.42 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. mt-Nd2 ENSMUSG00000064345 723.50 7516.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd3 ENSMUSG00000064360 681.58 7081.45 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Igf2 ENSMUSG00000048583 635.00 6597.50 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Eef1a1 ENSMUSG00000037742 630.34 6549.08 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 627.24 6516.87 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Co3 ENSMUSG00000064358 600.84 6242.58 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Gm13340 ENSMUSG00000083563 344.67 3581.04 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 321.38 3339.06 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Nd5 ENSMUSG00000064367 304.30 3161.60 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Npm1 ENSMUSG00000057113 265.49 2758.38 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hmga2 ENSMUSG00000056758 249.96 2597.02 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Pkm ENSMUSG00000032294 245.31 2548.71 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Cfl1 ENSMUSG00000056201 235.99 2451.88 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Hbb-y ENSMUSG00000052187 231.33 2403.46 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Tuba1b ENSMUSG00000023004 229.78 2387.36 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Nedd4 ENSMUSG00000032216 228.23 2371.25 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Tpt1 ENSMUSG00000060126 222.02 2306.73 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Eif4g2 ENSMUSG00000005610 200.28 2080.86 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Tubb5 ENSMUSG00000001525 195.62 2032.44 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Ubb ENSMUSG00000019505 183.20 1903.40 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Hsp90ab1 ENSMUSG00000023944 178.55 1855.09 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Set ENSMUSG00000054766 178.55 1855.09 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Rpl23 ENSMUSG00000071415 170.78 1774.36 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Gm10800 ENSMUSG00000075014 161.47 1677.63 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
35. Cdkn1c ENSMUSG00000037664 158.36 1645.32 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Col3a1 ENSMUSG00000026043 158.36 1645.32 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
37. Eef2 ENSMUSG00000034994 158.36 1645.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
38. Myl6 ENSMUSG00000090841 158.36 1645.32 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
39. Rpl4 ENSMUSG00000032399 155.26 1613.11 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Rpl18a ENSMUSG00000045128 152.15 1580.80 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
41. Eif5a ENSMUSG00000078812 150.60 1564.70 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. U2af2 ENSMUSG00000030435 149.05 1548.59 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
43. Banf1 ENSMUSG00000024844 147.49 1532.39 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Hba-a1 ENSMUSG00000069919 141.28 1467.87 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
45. Rps20 ENSMUSG00000028234 139.73 1451.76 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
46. Rps26 ENSMUSG00000025362 138.18 1435.66 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Pcbp1 ENSMUSG00000051695 136.63 1419.55 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
48. Ywhab ENSMUSG00000018326 136.63 1419.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Eef1b2 ENSMUSG00000025967 135.07 1403.34 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Atp5g3 ENSMUSG00000018770 131.97 1371.14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Hsp90aa1 ENSMUSG00000021270 128.86 1338.82 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Rps4x ENSMUSG00000031320 128.86 1338.82 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Ybx1 ENSMUSG00000028639 128.86 1338.82 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
54. Grb10 ENSMUSG00000020176 125.76 1306.62 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
55. Fkbp1a ENSMUSG00000032966 124.21 1290.51 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Rps5 ENSMUSG00000012848 124.21 1290.51 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
57. Rpl37 ENSMUSG00000041841 122.65 1274.30 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
58. Tmsb4x ENSMUSG00000049775 122.65 1274.30 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
59. Ccnd2 ENSMUSG00000000184 121.10 1258.20 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
60. Ran ENSMUSG00000029430 118.00 1225.99 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 118.00 1225.99 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
62. Tmsb10 ENSMUSG00000079523 118.00 1225.99 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
63. Ywhae ENSMUSG00000020849 118.00 1225.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
64. Marcks ENSMUSG00000069662 116.44 1209.78 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
65. Hba-x ENSMUSG00000055609 114.89 1193.68 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
66. Hmgn1 ENSMUSG00000040681 114.89 1193.68 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
67. Chchd2 ENSMUSG00000070493 113.34 1177.58 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
68. Fscn1 ENSMUSG00000029581 113.34 1177.58 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
69. H3f3b ENSMUSG00000016559 113.34 1177.58 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
70. Lamp1 ENSMUSG00000031447 111.79 1161.47 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
71. Rplp1 ENSMUSG00000007892 111.79 1161.47 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Rps3a1 ENSMUSG00000028081 110.23 1145.26 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
73. 2810417H13Rik 108.68 1129.16 RIKEN cDNA 2810417H13 gene
74. Fkbp4 ENSMUSG00000030357 108.68 1129.16 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
75. Paics ENSMUSG00000029247 108.68 1129.16 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Calr ENSMUSG00000003814 102.47 1064.64 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
77. Rrm2 ENSMUSG00000020649 102.47 1064.64 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
78. Ndufc2 ENSMUSG00000030647 99.36 1032.33 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
79. Pabpc1 ENSMUSG00000022283 99.36 1032.33 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
80. Adprh ENSMUSG00000002844 97.81 1016.22 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
81. Hnrnpc ENSMUSG00000060373 97.81 1016.22 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
82. Ddx5 ENSMUSG00000020719 96.26 1000.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
83. Gm5805 ENSMUSG00000061848 93.15 967.81 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 93.15 967.81 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
85. Srsf3 ENSMUSG00000071172 93.15 967.81 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
86. Trim28 ENSMUSG00000005566 93.15 967.81 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
87. Cox8a ENSMUSG00000035885 91.60 951.70 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
88. Rpl41 ENSMUSG00000093674 91.60 951.70 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
89. Gpc3 ENSMUSG00000055653 90.05 935.60 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
90. Ngfrap1 90.05 935.60 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
91. Cdk4 ENSMUSG00000006728 88.50 919.49 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
92. Son ENSMUSG00000022961 86.94 903.29 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
93. Anp32b ENSMUSG00000028333 85.39 887.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Morf4l1 ENSMUSG00000062270 85.39 887.18 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
95. Ndufa12 ENSMUSG00000020022 85.39 887.18 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
96. mt-Rnr1 ENSMUSG00000064337 85.39 887.18 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
97. Morf4l2 ENSMUSG00000031422 83.84 871.08 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
98. Tecr ENSMUSG00000031708 83.84 871.08 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
99. Tmpo ENSMUSG00000019961 83.84 871.08 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
100. Peg3 ENSMUSG00000002265 82.29 854.97 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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