Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s24.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4594.63 47742.47 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3266.84 33945.50 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2198.30 22842.38 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2095.86 21777.93 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2046.07 21260.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1941.90 20178.14 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1275.14 13249.89 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1239.09 12875.29 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd2 ENSMUSG00000064345 736.58 7653.75 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd3 ENSMUSG00000064360 698.81 7261.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Hbb-y ENSMUSG00000052187 657.60 6833.07 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
12. Actb ENSMUSG00000029580 647.30 6726.05 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 646.73 6720.12 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Rnr2 ENSMUSG00000064339 632.42 6571.43 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. Mdk ENSMUSG00000027239 606.67 6303.86 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Co3 ENSMUSG00000064358 571.18 5935.09 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Igf2 ENSMUSG00000048583 548.86 5703.16 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Hba-x ENSMUSG00000055609 368.58 3829.89 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
19. Gm13340 ENSMUSG00000083563 343.40 3568.24 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Rpsa ENSMUSG00000032518 340.53 3538.42 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tuba1b ENSMUSG00000023004 294.18 3056.80 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Hba-a1 ENSMUSG00000069919 279.87 2908.11 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. mt-Nd5 ENSMUSG00000064367 274.14 2848.57 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Cfl1 ENSMUSG00000056201 257.55 2676.18 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Nedd4 ENSMUSG00000032216 230.65 2396.67 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Npm1 ENSMUSG00000057113 222.06 2307.41 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Tpt1 ENSMUSG00000060126 221.49 2301.49 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Eif4g2 ENSMUSG00000005610 205.47 2135.02 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Cdkn1c ENSMUSG00000037664 202.03 2099.28 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
30. Ubb ENSMUSG00000019505 199.17 2069.56 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Pkm ENSMUSG00000032294 190.58 1980.30 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Rpl4 ENSMUSG00000032399 184.29 1914.94 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Hsp90ab1 ENSMUSG00000023944 183.14 1902.99 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Eif5a ENSMUSG00000078812 178.57 1855.51 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Rpl23 ENSMUSG00000071415 172.84 1795.97 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Tubb5 ENSMUSG00000001525 171.13 1778.20 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Hbb-bh1 ENSMUSG00000052217 168.84 1754.40 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
38. Hmga2 ENSMUSG00000056758 167.12 1736.53 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
39. Tmsb4x ENSMUSG00000049775 155.10 1611.63 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
40. Eef1b2 ENSMUSG00000025967 152.24 1581.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. Col3a1 ENSMUSG00000026043 151.09 1569.97 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
42. Chchd2 ENSMUSG00000070493 146.52 1522.48 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Gm10800 ENSMUSG00000075014 144.80 1504.61 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
44. U2af2 ENSMUSG00000030435 138.50 1439.14 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
45. Hnrnpc ENSMUSG00000060373 137.93 1433.22 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
46. Rps20 ENSMUSG00000028234 137.93 1433.22 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Atp5g3 ENSMUSG00000018770 137.36 1427.30 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Pcbp1 ENSMUSG00000051695 137.36 1427.30 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Myl6 ENSMUSG00000090841 135.07 1403.50 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. Hba-a2 ENSMUSG00000069917 134.50 1397.58 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
51. Fkbp1a ENSMUSG00000032966 131.06 1361.83 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
52. Ywhab ENSMUSG00000018326 130.49 1355.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Rps26 ENSMUSG00000025362 129.35 1344.07 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Banf1 ENSMUSG00000024844 125.34 1302.40 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Rrm2 ENSMUSG00000020649 121.91 1266.76 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
56. Set ENSMUSG00000054766 121.91 1266.76 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Rpl18a ENSMUSG00000045128 121.33 1260.73 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
58. Rps5 ENSMUSG00000012848 121.33 1260.73 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
59. Hnrnpa2b1 ENSMUSG00000004980 120.76 1254.81 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
60. Grb10 ENSMUSG00000020176 119.62 1242.96 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. mt-Rnr1 ENSMUSG00000064337 119.62 1242.96 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
62. Hsp90aa1 ENSMUSG00000021270 119.04 1236.94 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
63. Hmgn1 ENSMUSG00000040681 118.47 1231.01 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Ybx1 ENSMUSG00000028639 118.47 1231.01 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
65. Pabpc1 ENSMUSG00000022283 114.47 1189.45 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Paics ENSMUSG00000029247 107.02 1112.04 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Gm5805 ENSMUSG00000061848 105.88 1100.19 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Rps3a1 ENSMUSG00000028081 104.16 1082.32 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.73 1046.68 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Ran ENSMUSG00000029430 99.58 1034.73 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
71. Cdk4 ENSMUSG00000006728 99.01 1028.81 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Marcks ENSMUSG00000069662 98.44 1022.88 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
73. Trim28 ENSMUSG00000005566 97.87 1016.96 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
74. Ywhaz ENSMUSG00000022285 97.30 1011.04 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
75. Gm14303 ENSMUSG00000081344 96.72 1005.01 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
76. Ndufa12 ENSMUSG00000020022 96.72 1005.01 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
77. Anp32b ENSMUSG00000028333 96.15 999.09 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
78. Rps4x ENSMUSG00000031320 95.58 993.16 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
79. Hnrnph1 ENSMUSG00000007850 93.29 969.37 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
80. Tuba1a ENSMUSG00000072235 93.29 969.37 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
81. Morf4l2 ENSMUSG00000031422 91.57 951.50 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
82. Ddx5 ENSMUSG00000020719 89.28 927.70 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
83. Rplp1 ENSMUSG00000007892 89.28 927.70 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
84. Eef2 ENSMUSG00000034994 88.71 921.78 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
85. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 88.71 921.78 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
86. Tmsb10 ENSMUSG00000079523 88.71 921.78 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
87. Ccnd2 ENSMUSG00000000184 87.57 909.93 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
88. H3f3b ENSMUSG00000016559 87.57 909.93 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
89. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 86.42 897.98 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
90. Ago2 ENSMUSG00000036698 84.70 880.11 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
91. Fkbp4 ENSMUSG00000030357 83.56 868.27 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Lamp1 ENSMUSG00000031447 83.56 868.27 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
93. Mrfap1 ENSMUSG00000055302 83.56 868.27 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
94. Ywhae ENSMUSG00000020849 82.41 856.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
95. Nnat ENSMUSG00000067786 81.84 850.39 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
96. Rps15 ENSMUSG00000063457 80.13 832.63 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
97. Cox8a ENSMUSG00000035885 79.55 826.60 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
98. Srsf3 ENSMUSG00000071172 78.98 820.68 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
99. Tubb2b ENSMUSG00000045136 78.98 820.68 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
100. Rpl32 ENSMUSG00000057841 78.41 814.75 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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