Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_3, section s23.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3272.27 33995.95 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3245.32 33715.96 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2069.74 21502.74 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1979.93 20569.70 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1729.44 17967.33 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1446.02 15022.85 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1264.40 13135.98 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1158.62 12037.02 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Actb ENSMUSG00000029580 957.03 9942.68 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. H19 ENSMUSG00000000031 757.44 7869.12 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd2 ENSMUSG00000064345 753.45 7827.67 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd5 ENSMUSG00000064367 599.77 6231.07 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Mdk ENSMUSG00000027239 591.78 6148.06 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Eef1a1 ENSMUSG00000037742 572.82 5951.09 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Nd3 ENSMUSG00000064360 571.82 5940.70 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Gm10800 ENSMUSG00000075014 489.99 5090.56 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. mt-Co3 ENSMUSG00000064358 486.00 5049.10 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Igf2 ENSMUSG00000048583 482.01 5007.65 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Hbb-y ENSMUSG00000052187 349.28 3628.71 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Gm13340 ENSMUSG00000083563 342.30 3556.19 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Cfl1 ENSMUSG00000056201 283.42 2944.48 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Rpsa ENSMUSG00000032518 271.44 2820.02 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Npm1 ENSMUSG00000057113 269.45 2799.34 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 264.46 2747.50 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tubb5 ENSMUSG00000001525 258.47 2685.27 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Hba-x ENSMUSG00000055609 242.50 2519.36 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
27. Pkm ENSMUSG00000032294 235.52 2446.84 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Tuba1b ENSMUSG00000023004 230.53 2395.00 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Hba-a1 ENSMUSG00000069919 226.53 2353.44 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
30. Cdkn1c ENSMUSG00000037664 223.54 2322.38 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
31. Ubb ENSMUSG00000019505 222.54 2311.99 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Tpt1 ENSMUSG00000060126 210.57 2187.63 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Gm17132 ENSMUSG00000061331 201.59 2094.34 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
34. Hmga2 ENSMUSG00000056758 201.59 2094.34 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Eif4g2 ENSMUSG00000005610 197.59 2052.78 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rpl4 ENSMUSG00000032399 189.61 1969.88 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Hsp90ab1 ENSMUSG00000023944 187.61 1949.10 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Tuba1a ENSMUSG00000072235 179.63 1866.19 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
39. Tmsb4x ENSMUSG00000049775 175.64 1824.74 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
40. Eif5a ENSMUSG00000078812 156.68 1627.76 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Pcbp1 ENSMUSG00000051695 153.68 1596.60 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
42. Ybx1 ENSMUSG00000028639 151.69 1575.92 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Chchd2 ENSMUSG00000070493 149.69 1555.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Eef1b2 ENSMUSG00000025967 149.69 1555.14 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Rpl23 ENSMUSG00000071415 148.69 1544.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Rps20 ENSMUSG00000028234 146.70 1524.08 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Rps4x ENSMUSG00000031320 130.73 1358.17 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
48. Marcks ENSMUSG00000069662 126.74 1316.71 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
49. Hsp90aa1 ENSMUSG00000021270 125.74 1306.33 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Fkbp1a ENSMUSG00000032966 124.74 1295.94 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. U2af2 ENSMUSG00000030435 124.74 1295.94 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
52. Atp5g3 ENSMUSG00000018770 123.75 1285.65 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Pabpc1 ENSMUSG00000022283 123.75 1285.65 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Col3a1 ENSMUSG00000026043 121.75 1264.87 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
55. Hnrnpc ENSMUSG00000060373 118.76 1233.81 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
56. Set ENSMUSG00000054766 117.76 1223.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Ywhab ENSMUSG00000018326 115.76 1202.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Paics ENSMUSG00000029247 114.76 1192.25 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Trim28 ENSMUSG00000005566 114.76 1192.25 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
60. Map1b ENSMUSG00000052727 110.77 1150.80 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
61. Tubb2b ENSMUSG00000045136 107.78 1119.74 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
62. Rpl18a ENSMUSG00000045128 104.78 1088.57 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
63. Grb10 ENSMUSG00000020176 103.79 1078.29 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
64. Hnrnpa2b1 ENSMUSG00000004980 103.79 1078.29 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
65. Ywhaz ENSMUSG00000022285 103.79 1078.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
66. Fscn1 ENSMUSG00000029581 100.79 1047.12 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
67. Cdk4 ENSMUSG00000006728 99.79 1036.73 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
68. Ddx5 ENSMUSG00000020719 99.79 1036.73 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
69. Rpl41 ENSMUSG00000093674 99.79 1036.73 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
70. Rps26 ENSMUSG00000025362 99.79 1036.73 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
71. Myl6 ENSMUSG00000090841 98.80 1026.44 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
72. Rps5 ENSMUSG00000012848 98.80 1026.44 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Rrm2 ENSMUSG00000020649 98.80 1026.44 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
74. Ywhae ENSMUSG00000020849 98.80 1026.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
75. Gm15459 ENSMUSG00000100801 96.80 1005.67 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
76. Banf1 ENSMUSG00000024844 95.80 995.28 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
77. Rps3a1 ENSMUSG00000028081 95.80 995.28 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
78. Nnat ENSMUSG00000067786 94.80 984.89 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
79. Rpl32 ENSMUSG00000057841 94.80 984.89 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
80. Sub1 ENSMUSG00000022205 94.80 984.89 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
81. Rps9 ENSMUSG00000006333 93.81 974.60 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
82. Ngfrap1 91.81 953.82 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
83. Eef2 ENSMUSG00000034994 90.81 943.43 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
84. Anp32b ENSMUSG00000028333 89.82 933.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
85. Meg3 ENSMUSG00000021268 89.82 933.15 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
86. Gm14303 ENSMUSG00000081344 88.82 922.76 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
87. Srsf3 ENSMUSG00000071172 88.82 922.76 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
88. Tmsb10 ENSMUSG00000079523 88.82 922.76 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
89. Hmgn1 ENSMUSG00000040681 87.82 912.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
90. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 86.82 901.98 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 86.82 901.98 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Rplp1 ENSMUSG00000007892 84.83 881.31 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
93. Gm5805 ENSMUSG00000061848 83.83 870.92 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
94. Hba-a2 ENSMUSG00000069917 83.83 870.92 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
95. Cd24a ENSMUSG00000047139 82.83 860.53 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
96. Marcksl1 ENSMUSG00000047945 82.83 860.53 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
97. Ywhag ENSMUSG00000051391 82.83 860.53 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
98. mt-Rnr1 ENSMUSG00000064337 81.83 850.14 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
99. Ran ENSMUSG00000029430 80.83 839.75 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
100. Rpl8 ENSMUSG00000003970 78.84 819.08 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA