Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s2.

Sample reads: 96,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4887.15 50776.53 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 2992.13 31087.64 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. mt-Atp6 ENSMUSG00000064357 2692.92 27978.91 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co1 ENSMUSG00000064351 2493.44 25906.35 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
5. mt-Nd1 ENSMUSG00000064341 2493.44 25906.35 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2194.23 22797.62 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Ptma ENSMUSG00000026238 1795.28 18652.61 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
8. mt-Nd2 ENSMUSG00000064345 1695.54 17616.33 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Rnr2 ENSMUSG00000064339 1097.12 11398.86 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Gm13340 ENSMUSG00000083563 598.43 6217.57 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
11. Mdk ENSMUSG00000027239 598.43 6217.57 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. Eef1a1 ENSMUSG00000037742 498.69 5181.29 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Hbb-y ENSMUSG00000052187 498.69 5181.29 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. Hsp90aa1 ENSMUSG00000021270 498.69 5181.29 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
15. Tuba1a ENSMUSG00000072235 498.69 5181.29 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
16. Actb ENSMUSG00000029580 398.95 4145.01 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Cfl1 ENSMUSG00000056201 398.95 4145.01 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
18. Chchd2 ENSMUSG00000070493 398.95 4145.01 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
19. Cks2 ENSMUSG00000062248 398.95 4145.01 CDC28 protein kinase regulatory subunit 2 [Source:MGI Symbol;Acc:MGI:1913447]
20. H3f3b ENSMUSG00000016559 398.95 4145.01 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
21. Lamp1 ENSMUSG00000031447 398.95 4145.01 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
22. Map1b ENSMUSG00000052727 398.95 4145.01 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
23. Pkm ENSMUSG00000032294 398.95 4145.01 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Chchd3 ENSMUSG00000053768 299.21 3108.73 coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:MGI Symbol;Acc:MGI:1913325]
25. Dync1i2 ENSMUSG00000027012 299.21 3108.73 dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
26. Eif4g2 ENSMUSG00000005610 299.21 3108.73 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
27. Eif5a ENSMUSG00000078812 299.21 3108.73 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
28. Fgd4 ENSMUSG00000022788 299.21 3108.73 FYVE, RhoGEF and PH domain containing 4 [Source:MGI Symbol;Acc:MGI:2183747]
29. Fkbp1a ENSMUSG00000032966 299.21 3108.73 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
30. Gm17132 ENSMUSG00000061331 299.21 3108.73 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
31. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 299.21 3108.73 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
32. Ldha ENSMUSG00000063229 299.21 3108.73 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
33. Nr2f1 ENSMUSG00000069171 299.21 3108.73 nuclear receptor subfamily 2, group F, member 1 [Source:MGI Symbol;Acc:MGI:1352451]
34. Pbx1 ENSMUSG00000052534 299.21 3108.73 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
35. Ran ENSMUSG00000029430 299.21 3108.73 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
36. Rnd2 ENSMUSG00000001313 299.21 3108.73 Rho family GTPase 2 [Source:MGI Symbol;Acc:MGI:1338755]
37. Rpl18a ENSMUSG00000045128 299.21 3108.73 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Tma7 ENSMUSG00000091537 299.21 3108.73 translational machinery associated 7 [Source:MGI Symbol;Acc:MGI:1913417]
39. Tmsb10 ENSMUSG00000079523 299.21 3108.73 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
40. Tpt1 ENSMUSG00000060126 299.21 3108.73 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Trim28 ENSMUSG00000005566 299.21 3108.73 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
42. Tsc22d1 ENSMUSG00000022010 299.21 3108.73 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
43. Ubap1 ENSMUSG00000028437 299.21 3108.73 ubiquitin-associated protein 1 [Source:MGI Symbol;Acc:MGI:2149543]
44. Vcp ENSMUSG00000028452 299.21 3108.73 valosin containing protein [Source:MGI Symbol;Acc:MGI:99919]
45. Zkscan1 ENSMUSG00000029729 299.21 3108.73 zinc finger with KRAB and SCAN domains 1 [Source:MGI Symbol;Acc:MGI:1921820]
46. mt-Nd3 ENSMUSG00000064360 299.21 3108.73 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
47. mt-Nd5 ENSMUSG00000064367 299.21 3108.73 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
48. Acyp1 ENSMUSG00000008822 199.48 2072.56 acylphosphatase 1, erythrocyte (common) type [Source:MGI Symbol;Acc:MGI:1913454]
49. Adm ENSMUSG00000030790 199.48 2072.56 adrenomedullin [Source:MGI Symbol;Acc:MGI:108058]
50. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 199.48 2072.56 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
51. Anapc2 ENSMUSG00000026965 199.48 2072.56 anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
52. Arf2 ENSMUSG00000062421 199.48 2072.56 ADP-ribosylation factor 2 [Source:MGI Symbol;Acc:MGI:99595]
53. Arhgdia ENSMUSG00000025132 199.48 2072.56 Rho GDP dissociation inhibitor (GDI) alpha [Source:MGI Symbol;Acc:MGI:2178103]
54. Arid3b ENSMUSG00000004661 199.48 2072.56 AT rich interactive domain 3B (BRIGHT-like) [Source:MGI Symbol;Acc:MGI:1930768]
55. Atp5g3 ENSMUSG00000018770 199.48 2072.56 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
56. Bmyc ENSMUSG00000049086 199.48 2072.56 brain expressed myelocytomatosis oncogene [Source:MGI Symbol;Acc:MGI:88184]
57. Cadm1 ENSMUSG00000032076 199.48 2072.56 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
58. Chd7 ENSMUSG00000041235 199.48 2072.56 chromodomain helicase DNA binding protein 7 [Source:MGI Symbol;Acc:MGI:2444748]
59. Cox6a1 ENSMUSG00000041697 199.48 2072.56 cytochrome c oxidase subunit 6A1 [Source:MGI Symbol;Acc:MGI:103099]
60. Cyb5 Cyb5 199.48 2072.56
61. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 199.48 2072.56 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
62. Dnaja2 ENSMUSG00000031701 199.48 2072.56 DnaJ heat shock protein family (Hsp40) member A2 [Source:MGI Symbol;Acc:MGI:1931882]
63. Dnajc21 ENSMUSG00000044224 199.48 2072.56 DnaJ heat shock protein family (Hsp40) member C21 [Source:MGI Symbol;Acc:MGI:1925371]
64. Fscn1 ENSMUSG00000029581 199.48 2072.56 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
65. Gm10073 ENSMUSG00000060019 199.48 2072.56 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
66. Hba-a1 ENSMUSG00000069919 199.48 2072.56 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
67. Hba-x ENSMUSG00000055609 199.48 2072.56 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
68. Hbb-bh1 ENSMUSG00000052217 199.48 2072.56 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
69. Hdac2 ENSMUSG00000019777 199.48 2072.56 histone deacetylase 2 [Source:MGI Symbol;Acc:MGI:1097691]
70. Hnrnpa2b1 ENSMUSG00000004980 199.48 2072.56 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
71. Idh1 ENSMUSG00000025950 199.48 2072.56 isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
72. Kat6a ENSMUSG00000031540 199.48 2072.56 K(lysine) acetyltransferase 6A [Source:MGI Symbol;Acc:MGI:2442415]
73. Kdm2b ENSMUSG00000029475 199.48 2072.56 lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
74. Lsm14a ENSMUSG00000066568 199.48 2072.56 LSM14A mRNA processing body assembly factor [Source:MGI Symbol;Acc:MGI:1914320]
75. Mapk1 ENSMUSG00000063358 199.48 2072.56 mitogen-activated protein kinase 1 [Source:MGI Symbol;Acc:MGI:1346858]
76. Marcks ENSMUSG00000069662 199.48 2072.56 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
77. Myl6 ENSMUSG00000090841 199.48 2072.56 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
78. Nap1l1 ENSMUSG00000058799 199.48 2072.56 nucleosome assembly protein 1-like 1 [Source:MGI Symbol;Acc:MGI:1855693]
79. Nkd1 ENSMUSG00000031661 199.48 2072.56 naked cuticle 1 [Source:MGI Symbol;Acc:MGI:2135954]
80. Notch3 ENSMUSG00000038146 199.48 2072.56 notch 3 [Source:MGI Symbol;Acc:MGI:99460]
81. Npm1 ENSMUSG00000057113 199.48 2072.56 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
82. Pabpc1 ENSMUSG00000022283 199.48 2072.56 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
83. Palm ENSMUSG00000035863 199.48 2072.56 paralemmin [Source:MGI Symbol;Acc:MGI:1261814]
84. Pnrc2 ENSMUSG00000028675 199.48 2072.56 proline-rich nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:106512]
85. Ppm1d ENSMUSG00000020525 199.48 2072.56 protein phosphatase 1D magnesium-dependent, delta isoform [Source:MGI Symbol;Acc:MGI:1858214]
86. Prc1 ENSMUSG00000038943 199.48 2072.56 protein regulator of cytokinesis 1 [Source:MGI Symbol;Acc:MGI:1858961]
87. Prdx1 ENSMUSG00000028691 199.48 2072.56 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
88. Psmb6 ENSMUSG00000018286 199.48 2072.56 proteasome (prosome, macropain) subunit, beta type 6 [Source:MGI Symbol;Acc:MGI:104880]
89. Psmd8 ENSMUSG00000030591 199.48 2072.56 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 [Source:MGI Symbol;Acc:MGI:1888669]
90. Psme3 ENSMUSG00000078652 199.48 2072.56 proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) [Source:MGI Symbol;Acc:MGI:1096366]
91. Purb ENSMUSG00000094483 199.48 2072.56 purine rich element binding protein B [Source:MGI Symbol;Acc:MGI:1338779]
92. Rab14 ENSMUSG00000026878 199.48 2072.56 RAB14, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1915615]
93. Rpl23 ENSMUSG00000071415 199.48 2072.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
94. Rpl4 ENSMUSG00000032399 199.48 2072.56 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
95. Rpl9-ps6 ENSMUSG00000062456 199.48 2072.56 ribosomal protein L9, pseudogene 6 [Source:MGI Symbol;Acc:MGI:3642682]
96. Rps20 ENSMUSG00000028234 199.48 2072.56 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
97. Rps26 ENSMUSG00000025362 199.48 2072.56 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
98. Rps5 ENSMUSG00000012848 199.48 2072.56 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
99. Rps6ka6 ENSMUSG00000025665, ENSMUSG00000116203 199.48 2072.56 ribosomal protein S6 kinase polypeptide 6 [Source:MGI Symbol;Acc:MGI:1914321]
100. Rps8 ENSMUSG00000047675 199.48 2072.56 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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