Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s19.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3361.11 34924.08 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3259.79 33871.30 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2132.04 22153.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 1990.31 20680.59 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 1831.97 19035.34 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 1818.69 18897.35 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1257.85 13069.87 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 844.84 8778.43 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd3 ENSMUSG00000064360 725.26 7535.91 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 673.22 6995.19 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Eef1a1 ENSMUSG00000037742 649.41 6747.79 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd2 ENSMUSG00000064345 645.54 6707.57 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Actb ENSMUSG00000029580 571.90 5942.41 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Hbb-y ENSMUSG00000052187 524.84 5453.42 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. H19 ENSMUSG00000000031 460.07 4780.42 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Cfl1 ENSMUSG00000056201 369.27 3836.95 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
17. Tubb2b ENSMUSG00000045136 343.25 3566.59 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
18. Rpsa ENSMUSG00000032518 332.73 3457.28 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Tubb5 ENSMUSG00000001525 320.00 3325.00 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Mdk ENSMUSG00000027239 319.45 3319.29 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Gm13340 ENSMUSG00000083563 313.91 3261.73 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Tuba1a ENSMUSG00000072235 281.80 2928.08 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
23. Hba-a1 ENSMUSG00000069919 281.25 2922.37 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. mt-Nd5 ENSMUSG00000064367 280.69 2916.55 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
25. Hba-x ENSMUSG00000055609 279.58 2905.01 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
26. Pkm ENSMUSG00000032294 265.19 2755.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Igf2 ENSMUSG00000048583 262.98 2732.53 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
28. Ubb ENSMUSG00000019505 245.81 2554.12 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Tmsb4x ENSMUSG00000049775 231.42 2404.60 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
30. Npm1 ENSMUSG00000057113 230.87 2398.89 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Map1b ENSMUSG00000052727 219.79 2283.76 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
32. Nedd4 ENSMUSG00000032216 218.69 2272.33 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Chchd2 ENSMUSG00000070493 210.38 2185.98 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Tpt1 ENSMUSG00000060126 203.74 2116.99 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Eif4g2 ENSMUSG00000005610 190.45 1978.90 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rpl4 ENSMUSG00000032399 181.04 1881.12 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Tuba1b ENSMUSG00000023004 177.72 1846.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
38. Eif5a ENSMUSG00000078812 160.00 1662.50 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Hsp90ab1 ENSMUSG00000023944 157.23 1633.72 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Cd24a ENSMUSG00000047139 155.57 1616.47 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
41. Set ENSMUSG00000054766 154.46 1604.94 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Rrm2 ENSMUSG00000020649 153.36 1593.51 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Hba-a2 ENSMUSG00000069917 147.82 1535.94 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
44. Hsp90aa1 ENSMUSG00000021270 145.61 1512.98 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Rpl23 ENSMUSG00000071415 143.94 1495.63 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Rps26 ENSMUSG00000025362 143.39 1489.91 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Hnrnpc ENSMUSG00000060373 142.28 1478.38 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Atp5g3 ENSMUSG00000018770 140.62 1461.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Tmsb10 ENSMUSG00000079523 138.96 1443.88 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
50. Hmga2 ENSMUSG00000056758 134.53 1397.85 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
51. Pcbp1 ENSMUSG00000051695 131.76 1369.07 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
52. mt-Rnr1 ENSMUSG00000064337 129.00 1340.39 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
53. Ybx1 ENSMUSG00000028639 127.34 1323.14 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
54. Fkbp1a ENSMUSG00000032966 125.67 1305.79 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
55. Gm10800 ENSMUSG00000075014 125.67 1305.79 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
56. Ran ENSMUSG00000029430 123.46 1282.83 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Eef1b2 ENSMUSG00000025967 121.25 1259.87 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Rpl18a ENSMUSG00000045128 120.69 1254.05 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
59. Rps3a1 ENSMUSG00000028081 120.14 1248.33 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
60. Ywhab ENSMUSG00000018326 120.14 1248.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Stmn1 ENSMUSG00000028832 117.37 1219.55 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
62. Nnat ENSMUSG00000067786 116.82 1213.83 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
63. Pbx1 ENSMUSG00000052534 116.26 1208.02 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
64. Tubb3 ENSMUSG00000062380 115.71 1202.30 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
65. Fscn1 ENSMUSG00000029581 113.49 1179.23 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
66. Cdkn1c ENSMUSG00000037664 112.94 1173.52 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
67. Hmgn1 ENSMUSG00000040681 111.83 1161.99 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
68. Ina ENSMUSG00000034336 111.83 1161.99 internexin neuronal intermediate filament protein, alpha [Source:MGI Symbol;Acc:MGI:96568]
69. Tecr ENSMUSG00000031708 109.62 1139.02 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
70. U2af2 ENSMUSG00000030435 109.62 1139.02 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. Rps20 ENSMUSG00000028234 109.07 1133.31 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
72. Rps4x ENSMUSG00000031320 109.07 1133.31 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
73. Basp1 ENSMUSG00000045763 108.51 1127.49 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
74. Nefl ENSMUSG00000022055 107.96 1121.77 neurofilament, light polypeptide [Source:MGI Symbol;Acc:MGI:97313]
75. Grb10 ENSMUSG00000020176 106.85 1110.24 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
76. Jund ENSMUSG00000071076, ENSMUSG00000110974 106.85 1110.24 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
77. Stmn2 ENSMUSG00000027500 106.30 1104.52 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
78. Gm9844 ENSMUSG00000091955 103.53 1075.74 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
79. Gm5805 ENSMUSG00000061848 102.98 1070.03 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
80. Ywhae ENSMUSG00000020849 102.42 1064.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
81. Myl6 ENSMUSG00000090841 101.87 1058.49 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
82. Ywhaz ENSMUSG00000022285 101.87 1058.49 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
83. Marcks ENSMUSG00000069662 99.65 1035.43 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
84. Rplp1 ENSMUSG00000007892 99.10 1029.71 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
85. Rpl32 ENSMUSG00000057841 95.78 995.22 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
86. Hnrnpa2b1 ENSMUSG00000004980 95.22 989.40 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
87. Paics ENSMUSG00000029247 95.22 989.40 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
88. Rps5 ENSMUSG00000012848 94.67 983.68 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
89. Dpysl2 ENSMUSG00000022048 93.56 972.15 dihydropyrimidinase-like 2 [Source:MGI Symbol;Acc:MGI:1349763]
90. H3f3b ENSMUSG00000016559 93.56 972.15 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
91. Marcksl1 ENSMUSG00000047945 93.01 966.43 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
92. Trim28 ENSMUSG00000005566 92.46 960.72 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
93. Ywhag ENSMUSG00000051391 92.46 960.72 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
94. Calm2 ENSMUSG00000036438 91.90 954.90 calmodulin 2 [Source:MGI Symbol;Acc:MGI:103250]
95. Pabpc1 ENSMUSG00000022283 91.90 954.90 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
96. Hnrnpa0 ENSMUSG00000007836 91.35 949.18 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
97. Banf1 ENSMUSG00000024844 90.80 943.47 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
98. Ndufa12 ENSMUSG00000020022 90.80 943.47 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
99. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 90.80 943.47 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
100. Gm14303 ENSMUSG00000081344 90.24 937.65 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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