Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s18.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3886.09 40375.21 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3755.11 39014.37 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2512.80 26107.17 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2007.15 20853.63 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1985.04 20623.92 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1810.41 18809.57 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1278.23 13280.39 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 730.58 7590.49 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Eef1a1 ENSMUSG00000037742 704.05 7314.85 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. mt-Co3 ENSMUSG00000064358 686.92 7136.87 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Hbb-y ENSMUSG00000052187 580.81 6034.43 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
12. H19 ENSMUSG00000000031 548.76 5701.44 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Nd2 ENSMUSG00000064345 522.23 5425.80 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Actb ENSMUSG00000029580 518.37 5385.70 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Rnr2 ENSMUSG00000064339 398.45 4139.77 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Gm13340 ENSMUSG00000083563 367.50 3818.21 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Mdk ENSMUSG00000027239 349.81 3634.41 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Rpsa ENSMUSG00000032518 344.84 3582.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Cfl1 ENSMUSG00000056201 325.50 3381.84 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Tubb2b ENSMUSG00000045136 294.55 3060.28 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
21. Hba-a1 ENSMUSG00000069919 287.92 2991.39 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Tubb5 ENSMUSG00000001525 284.60 2956.90 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Pkm ENSMUSG00000032294 274.66 2853.63 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Ubb ENSMUSG00000019505 268.02 2784.64 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Tuba1a ENSMUSG00000072235 266.92 2773.21 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
26. Hba-x ENSMUSG00000055609 258.63 2687.08 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
27. Tuba1b ENSMUSG00000023004 257.53 2675.65 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Tmsb4x ENSMUSG00000049775 245.92 2555.03 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
29. Tpt1 ENSMUSG00000060126 233.76 2428.69 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Npm1 ENSMUSG00000057113 223.81 2325.31 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Eif4g2 ENSMUSG00000005610 214.97 2233.47 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Igf2 ENSMUSG00000048583 209.45 2176.12 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
33. mt-Nd5 ENSMUSG00000064367 209.45 2176.12 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
34. Nedd4 ENSMUSG00000032216 207.79 2158.87 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Rpl4 ENSMUSG00000032399 195.63 2032.53 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Map1b ENSMUSG00000052727 190.66 1980.90 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
37. Chchd2 ENSMUSG00000070493 184.58 1917.73 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Rpl23 ENSMUSG00000071415 168.00 1745.47 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Rps20 ENSMUSG00000028234 163.03 1693.83 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Atp5g3 ENSMUSG00000018770 159.71 1659.33 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Hsp90aa1 ENSMUSG00000021270 157.50 1636.37 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Gm10800 ENSMUSG00000075014 154.74 1607.70 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
43. Eif5a ENSMUSG00000078812 154.18 1601.88 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Hsp90ab1 ENSMUSG00000023944 148.10 1538.71 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
45. Rpl18a ENSMUSG00000045128 141.47 1469.83 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
46. Hba-a2 ENSMUSG00000069917 138.71 1441.15 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
47. Hnrnpc ENSMUSG00000060373 138.16 1435.44 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Fkbp1a ENSMUSG00000032966 136.50 1418.19 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Cd24a ENSMUSG00000047139 132.63 1377.98 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
50. Eef1b2 ENSMUSG00000025967 130.97 1360.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Rps26 ENSMUSG00000025362 129.32 1343.59 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Tmsb10 ENSMUSG00000079523 128.76 1337.77 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
53. Stmn1 ENSMUSG00000028832 127.10 1320.53 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
54. Hbb-bh1 ENSMUSG00000052217 124.34 1291.85 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
55. Ybx1 ENSMUSG00000028639 123.79 1286.14 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
56. Ywhab ENSMUSG00000018326 122.13 1268.89 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Nnat ENSMUSG00000067786 121.58 1263.18 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
58. Ran ENSMUSG00000029430 121.58 1263.18 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Myl6 ENSMUSG00000090841 120.47 1251.64 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. Rps4x ENSMUSG00000031320 119.37 1240.22 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
61. Rplp1 ENSMUSG00000007892 118.82 1234.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
62. Hnrnpa2b1 ENSMUSG00000004980 116.60 1211.44 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
63. Pcbp1 ENSMUSG00000051695 116.05 1205.72 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
64. Banf1 ENSMUSG00000024844 115.50 1200.01 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
65. Cdkn1c ENSMUSG00000037664 115.50 1200.01 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
66. Stmn2 ENSMUSG00000027500 113.29 1177.05 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
67. Ndufa12 ENSMUSG00000020022 111.08 1154.08 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
68. Hmgn1 ENSMUSG00000040681 109.42 1136.84 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Ngfrap1 109.42 1136.84 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
70. Cox8a ENSMUSG00000035885 108.32 1125.41 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
71. Tubb3 ENSMUSG00000062380 108.32 1125.41 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
72. Rrm2 ENSMUSG00000020649 107.76 1119.59 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
73. Gm9844 ENSMUSG00000091955 106.10 1102.34 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
74. Hmga2 ENSMUSG00000056758 104.45 1085.20 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
75. Rpl32 ENSMUSG00000057841 103.34 1073.67 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
76. Rps3a1 ENSMUSG00000028081 103.34 1073.67 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
77. Paics ENSMUSG00000029247 102.24 1062.24 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
78. Ywhae ENSMUSG00000020849 102.24 1062.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Set ENSMUSG00000054766 98.37 1022.03 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
80. Ywhaz ENSMUSG00000022285 97.82 1016.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
81. Sub1 ENSMUSG00000022205 96.71 1004.79 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
82. Marcks ENSMUSG00000069662 95.60 993.25 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
83. Rpl37 ENSMUSG00000041841 95.60 993.25 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
84. Marcksl1 ENSMUSG00000047945 95.05 987.54 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
85. Trim28 ENSMUSG00000005566 95.05 987.54 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
86. Ddx5 ENSMUSG00000020719 94.50 981.82 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
87. Gm5805 ENSMUSG00000061848 94.50 981.82 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
88. Tecr ENSMUSG00000031708 94.50 981.82 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
89. Nefl ENSMUSG00000022055 92.84 964.58 neurofilament, light polypeptide [Source:MGI Symbol;Acc:MGI:97313]
90. Ywhag ENSMUSG00000051391 92.84 964.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
91. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 92.29 958.86 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
92. Eef2 ENSMUSG00000034994 91.74 953.15 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
93. Grb10 ENSMUSG00000020176 91.74 953.15 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.18 947.33 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Cdk4 ENSMUSG00000006728 89.53 930.19 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
96. Morf4l1 ENSMUSG00000062270 88.97 924.37 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
97. Srsf3 ENSMUSG00000071172 88.42 918.65 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
98. Gm14303 ENSMUSG00000081344 87.87 912.94 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Hnrnpa0 ENSMUSG00000007836 87.87 912.94 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
100. Rps5 ENSMUSG00000012848 87.87 912.94 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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