Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s81.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3583.93 37234.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 2994.42 31109.70 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Atp6 ENSMUSG00000064357 2428.36 25228.78 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2388.17 24811.23 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2113.51 21957.73 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. Ptma ENSMUSG00000026238 1855.60 19278.24 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1393.38 14476.14 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Gm10800 ENSMUSG00000075014 1168.96 12144.59 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
9. mt-Nd3 ENSMUSG00000064360 1045.03 10857.05 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 991.44 10300.29 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Rnr2 ENSMUSG00000064339 894.31 9291.19 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. mt-Co3 ENSMUSG00000064358 746.93 7760.02 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd2 ENSMUSG00000064345 659.84 6855.23 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Actb ENSMUSG00000029580 612.95 6368.07 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Col1a1 ENSMUSG00000001506 599.55 6228.86 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
16. Igf2 ENSMUSG00000048583 579.46 6020.14 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Eef1a1 ENSMUSG00000037742 532.57 5532.99 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Mdk ENSMUSG00000027239 465.58 4837.01 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Col3a1 ENSMUSG00000026043 415.33 4314.96 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
20. Col1a2 ENSMUSG00000029661 405.29 4210.65 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
21. Gm13340 ENSMUSG00000083563 361.74 3758.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Hbb-y ENSMUSG00000052187 351.69 3653.79 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Npm1 ENSMUSG00000057113 308.15 3201.44 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Plagl1 ENSMUSG00000019817 274.66 2853.50 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
25. Hba-a1 ENSMUSG00000069919 271.31 2818.70 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Ubb ENSMUSG00000019505 254.56 2644.68 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Rpsa ENSMUSG00000032518 244.51 2540.27 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Tuba1b ENSMUSG00000023004 237.81 2470.66 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. mt-Nd5 ENSMUSG00000064367 227.76 2366.25 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
30. Tmsb4x ENSMUSG00000049775 200.97 2087.92 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
31. Cfl1 ENSMUSG00000056201 190.92 1983.51 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Meg3 ENSMUSG00000021268 190.92 1983.51 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
33. Nedd4 ENSMUSG00000032216 187.57 1948.71 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Pkm ENSMUSG00000032294 177.52 1844.30 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Atp5g3 ENSMUSG00000018770 167.47 1739.88 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
36. Hba-x ENSMUSG00000055609 167.47 1739.88 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
37. Rpl23 ENSMUSG00000071415 160.77 1670.28 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
38. Grb10 ENSMUSG00000020176 157.42 1635.47 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Hmga2 ENSMUSG00000056758 157.42 1635.47 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
40. Rpl4 ENSMUSG00000032399 157.42 1635.47 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Tpt1 ENSMUSG00000060126 157.42 1635.47 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Ybx1 ENSMUSG00000028639 157.42 1635.47 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Afp ENSMUSG00000054932 154.08 1600.77 alpha fetoprotein [Source:MGI Symbol;Acc:MGI:87951]
44. Eif4g2 ENSMUSG00000005610 154.08 1600.77 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Peg3 ENSMUSG00000002265 154.08 1600.77 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
46. Tubb5 ENSMUSG00000001525 154.08 1600.77 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
47. Rplp1 ENSMUSG00000007892 150.73 1565.97 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. Eif5a ENSMUSG00000078812 147.38 1531.16 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Rps26 ENSMUSG00000025362 140.68 1461.56 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Tpm1 ENSMUSG00000032366 137.33 1426.75 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
51. Lamp1 ENSMUSG00000031447 133.98 1391.95 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
52. Myl6 ENSMUSG00000090841 133.98 1391.95 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
53. Rps20 ENSMUSG00000028234 133.98 1391.95 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
54. Chchd2 ENSMUSG00000070493 130.63 1357.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
55. Set ENSMUSG00000054766 130.63 1357.14 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
56. Ywhab ENSMUSG00000018326 130.63 1357.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Gm17132 ENSMUSG00000061331 127.28 1322.34 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
58. Ran ENSMUSG00000029430 123.93 1287.54 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Cdkn1c ENSMUSG00000037664 120.58 1252.73 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
60. Fkbp1a ENSMUSG00000032966 120.58 1252.73 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
61. Hba-a2 ENSMUSG00000069917 120.58 1252.73 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
62. Hsp90ab1 ENSMUSG00000023944 120.58 1252.73 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
63. Ldha ENSMUSG00000063229 120.58 1252.73 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
64. Rpl37 ENSMUSG00000041841 120.58 1252.73 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
65. Sparc ENSMUSG00000018593 120.58 1252.73 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
66. Eef1b2 ENSMUSG00000025967 117.23 1217.93 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
67. Igfbp4 ENSMUSG00000017493 117.23 1217.93 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
68. Rps4x ENSMUSG00000031320 117.23 1217.93 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Gm14303 ENSMUSG00000081344 113.88 1183.12 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
70. Sub1 ENSMUSG00000022205 110.53 1148.32 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
71. Hmgn1 ENSMUSG00000040681 107.18 1113.52 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
72. Hbb-bh1 ENSMUSG00000052217 103.83 1078.71 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
73. Pcbp1 ENSMUSG00000051695 103.83 1078.71 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
74. Rps3a1 ENSMUSG00000028081 103.83 1078.71 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Gm5805 ENSMUSG00000061848 100.48 1043.91 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Rpl18a ENSMUSG00000045128 100.48 1043.91 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
77. Rpl32 ENSMUSG00000057841 100.48 1043.91 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
78. Hnrnpc ENSMUSG00000060373 97.13 1009.11 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
79. Itm2a ENSMUSG00000031239 97.13 1009.11 integral membrane protein 2A [Source:MGI Symbol;Acc:MGI:107706]
80. Pdia6 ENSMUSG00000020571 97.13 1009.11 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
81. Banf1 ENSMUSG00000024844 93.79 974.41 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
82. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 93.79 974.41 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
83. Hnrnpa2b1 ENSMUSG00000004980 93.79 974.41 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
84. Rps5 ENSMUSG00000012848 93.79 974.41 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
85. Sfrp1 ENSMUSG00000031548 93.79 974.41 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
86. mt-Rnr1 ENSMUSG00000064337 93.79 974.41 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
87. Ago2 ENSMUSG00000036698 90.44 939.60 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
88. Gm5963 ENSMUSG00000052192 90.44 939.60 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
89. Paics ENSMUSG00000029247 90.44 939.60 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
90. Hnrnpk ENSMUSG00000021546 87.09 904.80 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
91. Prdx1 ENSMUSG00000028691 87.09 904.80 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
92. Acta2 ENSMUSG00000035783 83.74 869.99 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
93. Gm10717 ENSMUSG00000095891 83.74 869.99 predicted gene 10717 [Source:MGI Symbol;Acc:MGI:3642031]
94. Gm14586 ENSMUSG00000083621 83.74 869.99 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
95. Gnb2l1 Gnb2l1 83.74 869.99
96. Gpc3 ENSMUSG00000055653 83.74 869.99 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
97. Hsp90aa1 ENSMUSG00000021270 83.74 869.99 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
98. Serpinh1 ENSMUSG00000070436 83.74 869.99 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
99. Wbp5 83.74 869.99 WW domain binding protein 5
100. Calm1 ENSMUSG00000001175 80.39 835.19 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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