Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s79.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4104.94 42652.18 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 2935.21 30498.16 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Co2 ENSMUSG00000064354 2656.71 27604.42 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd4 ENSMUSG00000064363 2535.62 26346.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2523.51 26220.41 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. Ptma ENSMUSG00000026238 2104.54 21867.12 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1479.72 15374.96 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 988.09 10266.70 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Co3 ENSMUSG00000064358 862.16 8958.23 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Mdk ENSMUSG00000027239 847.63 8807.26 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. H19 ENSMUSG00000000031 804.04 8354.34 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Rnr2 ENSMUSG00000064339 767.71 7976.85 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. Igf2 ENSMUSG00000048583 753.18 7825.88 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Actb ENSMUSG00000029580 719.27 7473.54 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Nd2 ENSMUSG00000064345 665.99 6919.94 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Eef1a1 ENSMUSG00000037742 552.17 5737.30 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Gm13340 ENSMUSG00000083563 389.91 4051.34 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Col3a1 ENSMUSG00000026043 300.30 3120.25 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
19. Col1a1 ENSMUSG00000001506 285.77 2969.28 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
20. mt-Nd5 ENSMUSG00000064367 285.77 2969.28 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Tuba1b ENSMUSG00000023004 283.35 2944.13 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Npm1 ENSMUSG00000057113 273.66 2843.45 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Tpt1 ENSMUSG00000060126 251.87 2617.04 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
24. Gm10800 ENSMUSG00000075014 244.60 2541.50 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
25. Hmga2 ENSMUSG00000056758 234.91 2440.82 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
26. Ubb ENSMUSG00000019505 230.07 2390.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Nedd4 ENSMUSG00000032216 217.96 2264.70 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Pkm ENSMUSG00000032294 215.54 2239.56 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Rpsa ENSMUSG00000032518 213.12 2214.41 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
30. Tubb5 ENSMUSG00000001525 213.12 2214.41 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Hbb-y ENSMUSG00000052187 208.27 2164.02 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
32. Col1a2 ENSMUSG00000029661 198.59 2063.44 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
33. Cfl1 ENSMUSG00000056201 196.17 2038.29 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
34. Rpl4 ENSMUSG00000032399 193.74 2013.05 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Grb10 ENSMUSG00000020176 191.32 1987.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
36. Fkbp1a ENSMUSG00000032966 167.10 1736.24 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
37. Myl6 ENSMUSG00000090841 164.68 1711.10 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Plagl1 ENSMUSG00000019817 159.84 1660.81 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
39. Hsp90ab1 ENSMUSG00000023944 157.42 1635.66 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Sfrp1 ENSMUSG00000031548 157.42 1635.66 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
41. Eef1b2 ENSMUSG00000025967 152.57 1585.27 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Eif4g2 ENSMUSG00000005610 150.15 1560.13 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. Chchd2 ENSMUSG00000070493 145.31 1509.84 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Meg3 ENSMUSG00000021268 145.31 1509.84 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
45. Rpl23 ENSMUSG00000071415 142.89 1484.69 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Acta2 ENSMUSG00000035783 140.46 1459.44 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
47. Hnrnpc ENSMUSG00000060373 133.20 1384.01 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Rps26 ENSMUSG00000025362 130.78 1358.86 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Set ENSMUSG00000054766 130.78 1358.86 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
50. Banf1 ENSMUSG00000024844 128.36 1333.72 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Gm14303 ENSMUSG00000081344 128.36 1333.72 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
52. Peg3 ENSMUSG00000002265 125.93 1308.47 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
53. Tpm1 ENSMUSG00000032366 123.51 1283.32 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
54. Rps20 ENSMUSG00000028234 116.25 1207.89 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Tmsb4x ENSMUSG00000049775 116.25 1207.89 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
56. Paics ENSMUSG00000029247 113.82 1182.64 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
57. Rpl18a ENSMUSG00000045128 113.82 1182.64 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
58. Rps4x ENSMUSG00000031320 111.40 1157.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
59. Pcbp1 ENSMUSG00000051695 108.98 1132.35 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
60. Sparc ENSMUSG00000018593 108.98 1132.35 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
61. Ywhab ENSMUSG00000018326 108.98 1132.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Eif5a ENSMUSG00000078812 99.29 1031.67 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
63. Hsp90aa1 ENSMUSG00000021270 99.29 1031.67 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Atp5g3 ENSMUSG00000018770 96.87 1006.52 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
65. Gm5805 ENSMUSG00000061848 96.87 1006.52 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
66. mt-Rnr1 ENSMUSG00000064337 96.87 1006.52 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
67. Ddx5 ENSMUSG00000020719 94.45 981.38 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
68. Hmgn1 ENSMUSG00000040681 94.45 981.38 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Ran ENSMUSG00000029430 94.45 981.38 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
70. Hba-a1 ENSMUSG00000069919 92.03 956.23 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
71. Pabpc1 ENSMUSG00000022283 92.03 956.23 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
72. Rpl32 ENSMUSG00000057841 92.03 956.23 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
73. Rpl8 ENSMUSG00000003970 92.03 956.23 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Tsc22d1 ENSMUSG00000022010 92.03 956.23 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
75. Ybx1 ENSMUSG00000028639 92.03 956.23 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
76. Rpl37 ENSMUSG00000041841 87.18 905.84 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
77. Serpinh1 ENSMUSG00000070436 87.18 905.84 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
78. Son ENSMUSG00000022961 87.18 905.84 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
79. Cdc42 ENSMUSG00000006699 84.76 880.69 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
80. Gpc3 ENSMUSG00000055653 84.76 880.69 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
81. H3f3b ENSMUSG00000016559 84.76 880.69 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
82. Hnrnpa2b1 ENSMUSG00000004980 84.76 880.69 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Igfbp4 ENSMUSG00000017493 84.76 880.69 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
84. Rps3a1 ENSMUSG00000028081 84.76 880.69 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
85. Wbp5 84.76 880.69 WW domain binding protein 5
86. Igfbp5 ENSMUSG00000026185 82.34 855.55 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
87. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 82.34 855.55 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
88. Sub1 ENSMUSG00000022205 82.34 855.55 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
89. U2af2 ENSMUSG00000030435 82.34 855.55 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
90. Gm8292 ENSMUSG00000100215 79.92 830.40 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
91. Gnb2l1 Gnb2l1 79.92 830.40
92. Hnrnpa0 ENSMUSG00000007836 79.92 830.40 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Morf4l1 ENSMUSG00000062270 79.92 830.40 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
94. Itga6 ENSMUSG00000027111 77.50 805.26 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
95. Marcks ENSMUSG00000069662 77.50 805.26 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
96. Rps9 ENSMUSG00000006333 77.50 805.26 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
97. Ago2 ENSMUSG00000036698 75.08 780.12 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
98. Morf4l2 ENSMUSG00000031422 75.08 780.12 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
99. Ngfrap1 75.08 780.12 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
100. Trim28 ENSMUSG00000005566 75.08 780.12 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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