Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s78.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4016.76 41737.45 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 2536.36 26354.87 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Nd4 ENSMUSG00000064363 2308.60 23988.26 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2287.90 23773.17 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 1935.91 20115.70 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Co1 ENSMUSG00000064351 1283.71 13338.80 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. Ptma ENSMUSG00000026238 1263.00 13123.61 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
8. Actb ENSMUSG00000029580 1242.30 12908.52 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. H19 ENSMUSG00000000031 1138.77 11832.76 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Eef1a1 ENSMUSG00000037742 848.90 8820.77 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Mdk ENSMUSG00000027239 828.20 8605.68 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Co3 ENSMUSG00000064358 807.49 8390.49 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Gm10800 ENSMUSG00000075014 755.73 7852.66 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
14. mt-Nd3 ENSMUSG00000064360 735.03 7637.57 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. mt-Nd2 ENSMUSG00000064345 693.62 7207.28 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. mt-Rnr2 ENSMUSG00000064339 569.39 5916.43 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Hbb-y ENSMUSG00000052187 538.33 5593.69 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Igf2 ENSMUSG00000048583 434.80 4517.93 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Col1a1 ENSMUSG00000001506 341.63 3549.82 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
20. Hba-x ENSMUSG00000055609 289.87 3011.99 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Hmga2 ENSMUSG00000056758 279.52 2904.44 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Tuba1b ENSMUSG00000023004 269.16 2796.79 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Gm13340 ENSMUSG00000083563 258.81 2689.25 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Tpt1 ENSMUSG00000060126 248.46 2581.70 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
25. Rpl37 ENSMUSG00000041841 238.11 2474.16 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
26. Ran ENSMUSG00000029430 227.75 2366.51 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
27. mt-Nd5 ENSMUSG00000064367 227.75 2366.51 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Atp5g3 ENSMUSG00000018770 217.40 2258.97 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
29. Col3a1 ENSMUSG00000026043 217.40 2258.97 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
30. Pkm ENSMUSG00000032294 217.40 2258.97 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Ubb ENSMUSG00000019505 217.40 2258.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Eif5a ENSMUSG00000078812 207.05 2151.42 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
33. Nedd4 ENSMUSG00000032216 207.05 2151.42 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Rpl32 ENSMUSG00000057841 207.05 2151.42 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
35. Cfl1 ENSMUSG00000056201 196.70 2043.88 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
36. Npm1 ENSMUSG00000057113 196.70 2043.88 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
37. Hba-a1 ENSMUSG00000069919 186.34 1936.23 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
38. Rpl18a ENSMUSG00000045128 186.34 1936.23 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
39. Rpsa ENSMUSG00000032518 186.34 1936.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
40. Meg3 ENSMUSG00000021268 175.99 1828.68 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
41. Rpl4 ENSMUSG00000032399 175.99 1828.68 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Gm9844 ENSMUSG00000091955 165.64 1721.14 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
43. Grb10 ENSMUSG00000020176 165.64 1721.14 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Acta2 ENSMUSG00000035783 155.29 1613.59 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
45. Rps26 ENSMUSG00000025362 155.29 1613.59 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Rps4x ENSMUSG00000031320 155.29 1613.59 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Set ENSMUSG00000054766 155.29 1613.59 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
48. Tpm1 ENSMUSG00000032366 155.29 1613.59 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
49. Wbp5 155.29 1613.59 WW domain binding protein 5
50. Myl6 ENSMUSG00000090841 144.93 1505.94 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
51. Peg3 ENSMUSG00000002265 144.93 1505.94 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
52. Cdk4 ENSMUSG00000006728 134.58 1398.40 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
53. Chchd2 ENSMUSG00000070493 134.58 1398.40 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
54. Rps20 ENSMUSG00000028234 134.58 1398.40 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Tubb5 ENSMUSG00000001525 134.58 1398.40 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
56. Banf1 ENSMUSG00000024844 124.23 1290.85 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Fkbp1a ENSMUSG00000032966 124.23 1290.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. H3f3b ENSMUSG00000016559 124.23 1290.85 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
59. Hmgn1 ENSMUSG00000040681 124.23 1290.85 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
60. Igfbp4 ENSMUSG00000017493 124.23 1290.85 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
61. Rpl23 ENSMUSG00000071415 124.23 1290.85 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
62. Col5a2 ENSMUSG00000026042 113.88 1183.31 collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
63. Eef2 ENSMUSG00000034994 113.88 1183.31 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
64. Eif4g2 ENSMUSG00000005610 113.88 1183.31 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
65. Hnrnpc ENSMUSG00000060373 113.88 1183.31 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
66. Hsp90ab1 ENSMUSG00000023944 113.88 1183.31 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
67. Pabpc1 ENSMUSG00000022283 113.88 1183.31 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
68. Pdia6 ENSMUSG00000020571 113.88 1183.31 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
69. Sfrp1 ENSMUSG00000031548 113.88 1183.31 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
70. Slc38a2 ENSMUSG00000022462 113.88 1183.31 solute carrier family 38, member 2 [Source:MGI Symbol;Acc:MGI:1915010]
71. Srsf3 ENSMUSG00000071172 113.88 1183.31 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
72. Tmsb10 ENSMUSG00000079523 113.88 1183.31 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
73. Tmsb4x ENSMUSG00000049775 113.88 1183.31 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
74. Abl1 ENSMUSG00000026842 103.52 1075.66 c-abl oncogene 1, non-receptor tyrosine kinase [Source:MGI Symbol;Acc:MGI:87859]
75. Arl6ip1 ENSMUSG00000030654 103.52 1075.66 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
76. Calm1 ENSMUSG00000001175 103.52 1075.66 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
77. Hnrnph1 ENSMUSG00000007850 103.52 1075.66 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
78. Malat1 ENSMUSG00000092341 103.52 1075.66 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
79. Morf4l1 ENSMUSG00000062270 103.52 1075.66 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
80. Ndufa12 ENSMUSG00000020022 103.52 1075.66 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
81. Pcbp1 ENSMUSG00000051695 103.52 1075.66 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
82. Ssbp3 ENSMUSG00000061887 103.52 1075.66 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
83. Ywhae ENSMUSG00000020849 103.52 1075.66 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Anp32b ENSMUSG00000028333 93.17 968.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
85. Ddx5 ENSMUSG00000020719 93.17 968.11 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
86. Eef1b2 ENSMUSG00000025967 93.17 968.11 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
87. Hbb-bh1 ENSMUSG00000052217 93.17 968.11 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
88. Hsp90aa1 ENSMUSG00000021270 93.17 968.11 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
89. Id2 ENSMUSG00000020644 93.17 968.11 inhibitor of DNA binding 2 [Source:MGI Symbol;Acc:MGI:96397]
90. Nnat ENSMUSG00000067786 93.17 968.11 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
91. Pbx1 ENSMUSG00000052534 93.17 968.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
92. Rpl39-ps ENSMUSG00000036305 93.17 968.11 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
93. Rpl41 ENSMUSG00000093674 93.17 968.11 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
94. Rps3a1 ENSMUSG00000028081 93.17 968.11 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
95. Son ENSMUSG00000022961 93.17 968.11 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
96. Tsc22d1 ENSMUSG00000022010 93.17 968.11 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
97. Ywhab ENSMUSG00000018326 93.17 968.11 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
98. 2010107E04Rik 82.82 860.57 RIKEN cDNA 2010107E04 gene, transcript variant X1
99. Arpc2 ENSMUSG00000006304 82.82 860.57 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
100. Cdc42 ENSMUSG00000006699 82.82 860.57 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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