Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s73.

Sample reads: 96,260. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4306.90 44742.59 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2594.40 26952.14 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2581.57 26818.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2575.58 26756.63 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2469.52 25654.81 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2279.62 23682.02 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1449.89 15062.30 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 922.11 9579.42 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Eef1a1 ENSMUSG00000037742 839.14 8717.48 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. mt-Co3 ENSMUSG00000064358 734.78 7633.32 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Mdk ENSMUSG00000027239 730.50 7588.86 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. H19 ENSMUSG00000000031 691.16 7180.17 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Actb ENSMUSG00000029580 635.56 6602.57 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Rnr2 ENSMUSG00000064339 632.13 6566.93 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. mt-Nd2 ENSMUSG00000064345 586.80 6096.02 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Igf2 ENSMUSG00000048583 395.19 4105.46 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 370.38 3847.72 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hbb-y ENSMUSG00000052187 347.29 3607.85 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Tuba1b ENSMUSG00000023004 310.51 3225.76 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Hmga2 ENSMUSG00000056758 307.94 3199.06 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Npm1 ENSMUSG00000057113 298.53 3101.30 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tubb5 ENSMUSG00000001525 260.04 2701.45 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Pkm ENSMUSG00000032294 258.33 2683.68 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Rpsa ENSMUSG00000032518 246.35 2559.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. mt-Nd5 ENSMUSG00000064367 243.79 2532.63 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. Tpt1 ENSMUSG00000060126 232.67 2417.11 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Nedd4 ENSMUSG00000032216 223.26 2319.36 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Ubb ENSMUSG00000019505 218.98 2274.89 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Hba-a1 ENSMUSG00000069919 207.86 2159.37 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
30. Grb10 ENSMUSG00000020176 206.15 2141.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
31. Chchd2 ENSMUSG00000070493 201.87 2097.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Cfl1 ENSMUSG00000056201 200.16 2079.38 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Rpl4 ENSMUSG00000032399 190.75 1981.62 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Gm10800 ENSMUSG00000075014 181.34 1883.87 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
35. Hsp90ab1 ENSMUSG00000023944 168.51 1750.58 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Hnrnpc ENSMUSG00000060373 162.52 1688.35 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
37. Col3a1 ENSMUSG00000026043 160.81 1670.59 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
38. Hba-x ENSMUSG00000055609 151.40 1572.83 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
39. Rpl23 ENSMUSG00000071415 150.55 1564.00 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Hsp90aa1 ENSMUSG00000021270 148.84 1546.24 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Eif5a ENSMUSG00000078812 147.98 1537.30 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Rps20 ENSMUSG00000028234 146.27 1519.54 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Atp5g3 ENSMUSG00000018770 145.42 1510.71 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Eif4g2 ENSMUSG00000005610 138.57 1439.55 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Rpl18a ENSMUSG00000045128 135.15 1404.02 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
46. Myl6 ENSMUSG00000090841 134.30 1395.19 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
47. Eef1b2 ENSMUSG00000025967 131.73 1368.49 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Ywhab ENSMUSG00000018326 131.73 1368.49 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Set ENSMUSG00000054766 130.87 1359.55 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
50. Paics ENSMUSG00000029247 127.45 1324.02 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
51. Rps4x ENSMUSG00000031320 127.45 1324.02 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
52. Ran ENSMUSG00000029430 126.60 1315.19 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Rps26 ENSMUSG00000025362 124.03 1288.50 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Hnrnpa2b1 ENSMUSG00000004980 121.47 1261.90 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
55. Sfrp1 ENSMUSG00000031548 121.47 1261.90 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
56. Gm5805 ENSMUSG00000061848 120.61 1252.97 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
57. Ybx1 ENSMUSG00000028639 116.33 1208.50 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
58. Hmgn1 ENSMUSG00000040681 115.48 1199.67 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
59. Gm14303 ENSMUSG00000081344 112.91 1172.97 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
60. Rps3a1 ENSMUSG00000028081 111.20 1155.21 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
61. Banf1 ENSMUSG00000024844 108.63 1128.51 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
62. Rps5 ENSMUSG00000012848 107.78 1119.68 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Lamp1 ENSMUSG00000031447 103.50 1075.22 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
64. Rplp1 ENSMUSG00000007892 103.50 1075.22 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
65. Cd24a ENSMUSG00000047139 102.65 1066.39 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
66. Meg3 ENSMUSG00000021268 102.65 1066.39 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
67. Peg3 ENSMUSG00000002265 102.65 1066.39 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
68. Fkbp1a ENSMUSG00000032966 101.79 1057.45 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
69. Ywhaq ENSMUSG00000076432 100.94 1048.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
70. Rpl32 ENSMUSG00000057841 99.23 1030.86 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
71. Rpl37 ENSMUSG00000041841 99.23 1030.86 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
72. Tpm4 ENSMUSG00000031799 99.23 1030.86 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
73. U2af2 ENSMUSG00000030435 99.23 1030.86 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
74. Tsc22d1 ENSMUSG00000022010 98.37 1021.92 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
75. Pcbp1 ENSMUSG00000051695 97.51 1012.99 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
76. Trim28 ENSMUSG00000005566 94.95 986.40 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
77. Prdx1 ENSMUSG00000028691 94.09 977.46 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
78. Ldha ENSMUSG00000063229 93.24 968.63 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
79. Hba-a2 ENSMUSG00000069917 92.38 959.70 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
80. Hnrnpk ENSMUSG00000021546 92.38 959.70 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
81. Ndufa12 ENSMUSG00000020022 92.38 959.70 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Sub1 ENSMUSG00000022205 92.38 959.70 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
83. Ywhae ENSMUSG00000020849 92.38 959.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Ngfrap1 89.82 933.10 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
85. Pabpc1 ENSMUSG00000022283 89.82 933.10 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
86. Anp32b ENSMUSG00000028333 88.96 924.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
87. Wbp5 88.11 915.34 WW domain binding protein 5
88. Tmsb4x ENSMUSG00000049775 87.25 906.40 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
89. Hbb-bh1 ENSMUSG00000052217 85.54 888.64 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
90. Igfbp5 ENSMUSG00000026185 85.54 888.64 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
91. Cdk4 ENSMUSG00000006728 84.68 879.71 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
92. Srsf3 ENSMUSG00000071172 84.68 879.71 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Pbx1 ENSMUSG00000052534 83.83 870.87 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
94. Ago2 ENSMUSG00000036698 82.97 861.94 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
95. Hnrnph1 ENSMUSG00000007850 82.12 853.11 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
96. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 82.12 853.11 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
97. Serbp1 ENSMUSG00000036371 82.12 853.11 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
98. Rps9 ENSMUSG00000006333 81.26 844.18 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
99. Ddx5 ENSMUSG00000020719 80.41 835.35 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
100. Gm8292 ENSMUSG00000100215 80.41 835.35 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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