Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s72.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2962.33 30781.56 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2952.18 30676.09 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 2397.04 24907.63 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2346.29 24380.29 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2275.23 23641.91 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2058.95 21394.54 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1168.07 12137.41 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 851.85 8851.57 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Mdk ENSMUSG00000027239 787.04 8178.13 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. Actb ENSMUSG00000029580 698.03 7253.23 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 691.00 7180.18 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Rnr2 ENSMUSG00000064339 608.24 6320.22 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. H19 ENSMUSG00000000031 601.21 6247.17 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Eef1a1 ENSMUSG00000037742 599.65 6230.96 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Hbb-y ENSMUSG00000052187 564.51 5865.82 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Nd2 ENSMUSG00000064345 554.36 5760.35 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hmga2 ENSMUSG00000056758 398.99 4145.90 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Igf2 ENSMUSG00000048583 389.62 4048.54 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Gm13340 ENSMUSG00000083563 380.25 3951.18 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Hba-a1 ENSMUSG00000069919 313.10 3253.42 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
21. Tuba1b ENSMUSG00000023004 297.48 3091.11 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Npm1 ENSMUSG00000057113 290.46 3018.17 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Hba-x ENSMUSG00000055609 266.25 2766.60 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. Nedd4 ENSMUSG00000032216 240.48 2498.83 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Pkm ENSMUSG00000032294 240.48 2498.83 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Tubb5 ENSMUSG00000001525 236.58 2458.30 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. mt-Nd5 ENSMUSG00000064367 231.90 2409.67 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Gm10800 ENSMUSG00000075014 230.33 2393.36 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
29. Rpsa ENSMUSG00000032518 225.65 2344.73 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
30. Cfl1 ENSMUSG00000056201 220.96 2295.99 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
31. Ubb ENSMUSG00000019505 219.40 2279.78 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Tpt1 ENSMUSG00000060126 217.06 2255.47 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Rpl4 ENSMUSG00000032399 193.64 2012.11 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Hbb-bh1 ENSMUSG00000052217 185.05 1922.85 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
35. Grb10 ENSMUSG00000020176 172.56 1793.07 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
36. Col3a1 ENSMUSG00000026043 170.99 1776.76 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
37. Hnrnpc ENSMUSG00000060373 170.99 1776.76 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Hsp90ab1 ENSMUSG00000023944 168.65 1752.44 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Chchd2 ENSMUSG00000070493 167.09 1736.23 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Set ENSMUSG00000054766 156.94 1630.76 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
41. Sfrp1 ENSMUSG00000031548 155.38 1614.55 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
42. Rpl18a ENSMUSG00000045128 151.47 1573.92 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
43. Eif4g2 ENSMUSG00000005610 146.01 1517.19 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
44. Hba-a2 ENSMUSG00000069917 145.23 1509.08 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
45. Ran ENSMUSG00000029430 139.76 1452.25 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
46. Rps26 ENSMUSG00000025362 139.76 1452.25 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Banf1 ENSMUSG00000024844 138.98 1444.14 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Eif5a ENSMUSG00000078812 138.98 1444.14 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Ywhab ENSMUSG00000018326 137.42 1427.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Fkbp1a ENSMUSG00000032966 134.30 1395.51 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Atp5g3 ENSMUSG00000018770 133.52 1387.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Rpl23 ENSMUSG00000071415 132.74 1379.30 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Paics ENSMUSG00000029247 130.39 1354.88 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
54. Eef1b2 ENSMUSG00000025967 128.83 1338.67 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Ybx1 ENSMUSG00000028639 127.27 1322.46 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
56. Rps20 ENSMUSG00000028234 124.93 1298.15 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
57. Hmgn1 ENSMUSG00000040681 122.58 1273.73 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
58. Hsp90aa1 ENSMUSG00000021270 122.58 1273.73 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Myl6 ENSMUSG00000090841 122.58 1273.73 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. Pbx1 ENSMUSG00000052534 120.24 1249.41 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
61. Rps4x ENSMUSG00000031320 112.43 1168.26 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Ngfrap1 110.87 1152.05 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
63. Trim28 ENSMUSG00000005566 104.63 1087.21 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
64. Gm14303 ENSMUSG00000081344 103.85 1079.10 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
65. Pabpc1 ENSMUSG00000022283 103.06 1070.90 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Sub1 ENSMUSG00000022205 103.06 1070.90 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
67. Col1a1 ENSMUSG00000001506 100.72 1046.58 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
68. Rps5 ENSMUSG00000012848 100.72 1046.58 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Pcbp1 ENSMUSG00000051695 99.16 1030.37 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Rps3a1 ENSMUSG00000028081 99.16 1030.37 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
71. Wbp5 98.38 1022.27 WW domain binding protein 5
72. Ywhae ENSMUSG00000020849 98.38 1022.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
73. Gm5805 ENSMUSG00000061848 96.82 1006.06 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
74. H3f3b ENSMUSG00000016559 95.26 989.85 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.26 989.85 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 94.48 981.74 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
77. Rplp1 ENSMUSG00000007892 92.91 965.43 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
78. U2af2 ENSMUSG00000030435 92.91 965.43 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
79. Hnrnpa2b1 ENSMUSG00000004980 92.13 957.32 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
80. Meg3 ENSMUSG00000021268 90.57 941.11 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
81. Tsc22d1 ENSMUSG00000022010 90.57 941.11 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
82. Peg3 ENSMUSG00000002265 89.79 933.01 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
83. Tmpo ENSMUSG00000019961 89.79 933.01 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
84. Rrm2 ENSMUSG00000020649 89.01 924.90 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
85. Rpl37 ENSMUSG00000041841 88.23 916.80 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
86. Anp32b ENSMUSG00000028333 87.45 908.69 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
87. Ago2 ENSMUSG00000036698 85.89 892.48 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
88. Son ENSMUSG00000022961 85.89 892.48 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
89. Ndufa12 ENSMUSG00000020022 85.11 884.38 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
90. Cox8a ENSMUSG00000035885 83.54 868.06 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
91. Rpl32 ENSMUSG00000057841 81.20 843.75 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
92. Fkbp4 ENSMUSG00000030357 80.42 835.64 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
93. Kpnb1 ENSMUSG00000001440 80.42 835.64 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
94. Ccnd2 ENSMUSG00000000184 79.64 827.54 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
95. Hnrnpa0 ENSMUSG00000007836 79.64 827.54 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
96. Srsf3 ENSMUSG00000071172 79.64 827.54 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
97. Cdk4 ENSMUSG00000006728 78.86 819.43 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
98. Cdkn1c ENSMUSG00000037664 78.86 819.43 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
99. Hnrnpk ENSMUSG00000021546 78.86 819.43 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
100. Serbp1 ENSMUSG00000036371 78.86 819.43 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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