Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s71.

Sample reads: 96,263. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3571.48 37101.35 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 2807.93 29169.42 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Atp6 ENSMUSG00000064357 2660.67 27639.65 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2647.06 27498.27 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2577.76 26778.36 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 2299.31 23885.76 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1400.87 14552.56 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 931.85 9680.27 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Co3 ENSMUSG00000064358 821.71 8536.11 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Actb ENSMUSG00000029580 710.34 7379.17 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Eef1a1 ENSMUSG00000037742 693.01 7199.15 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Rnr2 ENSMUSG00000064339 671.97 6980.58 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. mt-Nd2 ENSMUSG00000064345 565.55 5875.06 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. H19 ENSMUSG00000000031 555.65 5772.22 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Mdk ENSMUSG00000027239 518.52 5386.50 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Hbb-y ENSMUSG00000052187 444.27 4615.18 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Hmga2 ENSMUSG00000056758 372.49 3869.51 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Gm13340 ENSMUSG00000083563 368.78 3830.97 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Igf2 ENSMUSG00000048583 339.08 3522.44 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Npm1 ENSMUSG00000057113 325.47 3381.06 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Tuba1b ENSMUSG00000023004 295.77 3072.53 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. mt-Nd5 ENSMUSG00000064367 273.49 2841.08 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Pkm ENSMUSG00000032294 249.98 2596.85 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Hba-a1 ENSMUSG00000069919 233.89 2429.70 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Cfl1 ENSMUSG00000056201 228.94 2378.28 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Tubb5 ENSMUSG00000001525 226.47 2352.62 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Tpt1 ENSMUSG00000060126 220.28 2288.32 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Hba-x ENSMUSG00000055609 200.48 2082.63 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Gm10800 ENSMUSG00000075014 199.24 2069.75 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
30. Ubb ENSMUSG00000019505 195.53 2031.21 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Grb10 ENSMUSG00000020176 194.29 2018.33 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
32. Rpsa ENSMUSG00000032518 194.29 2018.33 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
33. Rpl4 ENSMUSG00000032399 185.63 1928.37 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Nedd4 ENSMUSG00000032216 180.68 1876.95 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Hsp90ab1 ENSMUSG00000023944 176.97 1838.40 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Pbx1 ENSMUSG00000052534 174.49 1812.64 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
37. Eif4g2 ENSMUSG00000005610 159.64 1658.38 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Rps20 ENSMUSG00000028234 154.69 1606.96 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Col3a1 ENSMUSG00000026043 148.50 1542.65 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
40. Myl6 ENSMUSG00000090841 148.50 1542.65 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
41. Atp5g3 ENSMUSG00000018770 141.08 1465.57 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Ran ENSMUSG00000029430 137.36 1426.93 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
43. Eef1b2 ENSMUSG00000025967 136.13 1414.15 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Hnrnpc ENSMUSG00000060373 134.89 1401.27 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Eif5a ENSMUSG00000078812 132.41 1375.51 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Rpl23 ENSMUSG00000071415 129.94 1349.85 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Chchd2 ENSMUSG00000070493 128.70 1336.97 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Ywhab ENSMUSG00000018326 126.23 1311.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Hsp90aa1 ENSMUSG00000021270 124.99 1298.42 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Sfrp1 ENSMUSG00000031548 124.99 1298.42 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
51. Hmgn1 ENSMUSG00000040681 123.75 1285.54 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
52. Rpl18a ENSMUSG00000045128 123.75 1285.54 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
53. Rps26 ENSMUSG00000025362 123.75 1285.54 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Sub1 ENSMUSG00000022205 122.51 1272.66 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
55. Peg3 ENSMUSG00000002265 121.28 1259.88 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
56. Set ENSMUSG00000054766 121.28 1259.88 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Rps5 ENSMUSG00000012848 120.04 1247.00 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. Hba-a2 ENSMUSG00000069917 115.09 1195.58 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
59. Rps4x ENSMUSG00000031320 115.09 1195.58 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
60. Wbp5 111.38 1157.04 WW domain binding protein 5
61. Ybx1 ENSMUSG00000028639 111.38 1157.04 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. U2af2 ENSMUSG00000030435 110.14 1144.16 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
63. Banf1 ENSMUSG00000024844 108.90 1131.28 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
64. Gm5805 ENSMUSG00000061848 108.90 1131.28 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
65. Rpl41 ENSMUSG00000093674 107.66 1118.40 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
66. Trim28 ENSMUSG00000005566 106.43 1105.62 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Fkbp1a ENSMUSG00000032966 103.95 1079.86 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
68. Rps3a1 ENSMUSG00000028081 102.71 1066.97 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. H3f3b ENSMUSG00000016559 99.00 1028.43 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
70. Pabpc1 ENSMUSG00000022283 99.00 1028.43 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Rplp1 ENSMUSG00000007892 99.00 1028.43 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Gm14303 ENSMUSG00000081344 97.76 1015.55 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
73. Hbb-bh1 ENSMUSG00000052217 97.76 1015.55 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
74. Paics ENSMUSG00000029247 97.76 1015.55 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
75. Tpm4 ENSMUSG00000031799 97.76 1015.55 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
76. Anp32b ENSMUSG00000028333 96.53 1002.78 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
77. Ngfrap1 95.29 989.89 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Rpl32 ENSMUSG00000057841 95.29 989.89 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
79. Cdk4 ENSMUSG00000006728 92.81 964.13 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
80. Hnrnpa2b1 ENSMUSG00000004980 92.81 964.13 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
81. Meg3 ENSMUSG00000021268 92.81 964.13 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
82. mt-Rnr1 ENSMUSG00000064337 92.81 964.13 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
83. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 91.58 951.35 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
84. Tecr ENSMUSG00000031708 90.34 938.47 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
85. Ndufa12 ENSMUSG00000020022 89.10 925.59 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
86. Plagl1 ENSMUSG00000019817 87.86 912.71 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
87. Ago2 ENSMUSG00000036698 86.63 899.93 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
88. Atp5c1 ENSMUSG00000025781 86.63 899.93 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437]
89. Rrm2 ENSMUSG00000020649 86.63 899.93 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
90. Stmn1 ENSMUSG00000028832 86.63 899.93 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
91. Col1a1 ENSMUSG00000001506 85.39 887.05 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
92. Rpl8 ENSMUSG00000003970 84.15 874.17 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Cox8a ENSMUSG00000035885 82.91 861.29 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 82.91 861.29 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Morf4l1 ENSMUSG00000062270 81.68 848.51 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
96. Rpl26 ENSMUSG00000060938 81.68 848.51 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
97. 2810417H13Rik 79.20 822.75 RIKEN cDNA 2810417H13 gene
98. Igfbp4 ENSMUSG00000017493 79.20 822.75 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
99. Serbp1 ENSMUSG00000036371 79.20 822.75 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
100. Marcksl1 ENSMUSG00000047945 77.96 809.87 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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