Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s68.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3740.90 38869.57 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2656.21 27599.17 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2246.25 23339.51 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2126.67 22097.02 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2101.05 21830.82 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1964.40 20410.97 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1178.64 12246.58 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Actb ENSMUSG00000029580 1084.69 11270.40 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Nd3 ENSMUSG00000064360 854.09 8874.37 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Mdk ENSMUSG00000027239 802.84 8341.86 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Co3 ENSMUSG00000064358 777.22 8075.65 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 614.94 6389.49 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. H19 ENSMUSG00000000031 597.86 6212.02 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. mt-Rnr2 ENSMUSG00000064339 597.86 6212.02 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. Hbb-y ENSMUSG00000052187 572.24 5945.82 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Nd2 ENSMUSG00000064345 538.07 5590.78 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hmga2 ENSMUSG00000056758 461.21 4792.17 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Gm13340 ENSMUSG00000083563 401.42 4170.93 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Gm10800 ENSMUSG00000075014 350.18 3638.52 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
20. Npm1 ENSMUSG00000057113 341.63 3549.68 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Igf2 ENSMUSG00000048583 316.01 3283.48 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. mt-Nd5 ENSMUSG00000064367 316.01 3283.48 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Hba-a1 ENSMUSG00000069919 298.93 3106.01 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Cfl1 ENSMUSG00000056201 290.39 3017.28 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tuba1b ENSMUSG00000023004 290.39 3017.28 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Pkm ENSMUSG00000032294 256.23 2662.34 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Nedd4 ENSMUSG00000032216 239.14 2484.77 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Hsp90ab1 ENSMUSG00000023944 222.06 2307.30 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Banf1 ENSMUSG00000024844 213.52 2218.57 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
30. Tpt1 ENSMUSG00000060126 213.52 2218.57 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Hba-x ENSMUSG00000055609 204.98 2129.83 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Tubb5 ENSMUSG00000001525 204.98 2129.83 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Ubb ENSMUSG00000019505 204.98 2129.83 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Chchd2 ENSMUSG00000070493 187.90 1952.36 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Eif5a ENSMUSG00000078812 187.90 1952.36 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Hnrnpc ENSMUSG00000060373 187.90 1952.36 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
37. Ngfrap1 187.90 1952.36 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
38. Rpl32 ENSMUSG00000057841 187.90 1952.36 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
39. Grb10 ENSMUSG00000020176 179.36 1863.63 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Pbx1 ENSMUSG00000052534 179.36 1863.63 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
41. Rpl23 ENSMUSG00000071415 179.36 1863.63 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Eif4g2 ENSMUSG00000005610 170.82 1774.89 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. Rpsa ENSMUSG00000032518 170.82 1774.89 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
44. Plagl1 ENSMUSG00000019817 162.28 1686.16 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
45. Cdkn1c ENSMUSG00000037664 153.74 1597.43 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
46. Col3a1 ENSMUSG00000026043 153.74 1597.43 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
47. Rps26 ENSMUSG00000025362 153.74 1597.43 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
48. Col1a1 ENSMUSG00000001506 136.65 1419.85 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
49. Eef1b2 ENSMUSG00000025967 136.65 1419.85 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Fkbp1a ENSMUSG00000032966 136.65 1419.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Gm15459 ENSMUSG00000100801 136.65 1419.85 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
52. Igfbp4 ENSMUSG00000017493 136.65 1419.85 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
53. Meg3 ENSMUSG00000021268 136.65 1419.85 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
54. Morf4l2 ENSMUSG00000031422 136.65 1419.85 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
55. Paics ENSMUSG00000029247 136.65 1419.85 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Peg3 ENSMUSG00000002265 136.65 1419.85 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
57. Set ENSMUSG00000054766 136.65 1419.85 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
58. H2afy ENSMUSG00000015937 128.11 1331.12 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
59. Rpl4 ENSMUSG00000032399 128.11 1331.12 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
60. Tmem245 ENSMUSG00000055296 128.11 1331.12 transmembrane protein 245 [Source:MGI Symbol;Acc:MGI:2445107]
61. Ywhab ENSMUSG00000018326 128.11 1331.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Ago2 ENSMUSG00000036698 119.57 1242.38 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
63. Hbb-bh1 ENSMUSG00000052217 119.57 1242.38 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
64. Igfbp5 ENSMUSG00000026185 119.57 1242.38 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
65. Rrm2 ENSMUSG00000020649 119.57 1242.38 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
66. Ybx1 ENSMUSG00000028639 119.57 1242.38 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
67. Atp5g3 ENSMUSG00000018770 111.03 1153.65 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
68. Hba-a2 ENSMUSG00000069917 111.03 1153.65 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
69. Rps9 ENSMUSG00000006333 111.03 1153.65 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
70. Srsf3 ENSMUSG00000071172 111.03 1153.65 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
71. Tpm1 ENSMUSG00000032366 111.03 1153.65 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
72. 2810417H13Rik 102.49 1064.92 RIKEN cDNA 2810417H13 gene
73. Gm5805 ENSMUSG00000061848 102.49 1064.92 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
74. Gpc3 ENSMUSG00000055653 102.49 1064.92 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
75. Hmgn1 ENSMUSG00000040681 102.49 1064.92 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
76. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 102.49 1064.92 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
77. Rpl37 ENSMUSG00000041841 102.49 1064.92 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
78. Rplp1 ENSMUSG00000007892 102.49 1064.92 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
79. Rps10-ps1 ENSMUSG00000060438 102.49 1064.92 ribosomal protein S10, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644167]
80. Rps20 ENSMUSG00000028234 102.49 1064.92 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 102.49 1064.92 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Sparc ENSMUSG00000018593 102.49 1064.92 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
83. Trim28 ENSMUSG00000005566 102.49 1064.92 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
84. Tsc22d1 ENSMUSG00000022010 102.49 1064.92 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
85. U2af2 ENSMUSG00000030435 102.49 1064.92 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
86. 2010107E04Rik 93.95 976.18 RIKEN cDNA 2010107E04 gene, transcript variant X1
87. Anp32b ENSMUSG00000028333 93.95 976.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
88. Atp5b ENSMUSG00000025393 93.95 976.18 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
89. Cdk4 ENSMUSG00000006728 93.95 976.18 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
90. Gm14586 ENSMUSG00000083621 93.95 976.18 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
91. Ndufa12 ENSMUSG00000020022 93.95 976.18 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
92. Rps4x ENSMUSG00000031320 93.95 976.18 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
93. Serbp1 ENSMUSG00000036371 93.95 976.18 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
94. Ywhaq ENSMUSG00000076432 93.95 976.18 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
95. Arl6ip1 ENSMUSG00000030654 85.41 887.45 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
96. Atxn7l3b ENSMUSG00000074748 85.41 887.45 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
97. Ccnd2 ENSMUSG00000000184 85.41 887.45 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
98. Cd24a ENSMUSG00000047139 85.41 887.45 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
99. Cnn3 ENSMUSG00000053931 85.41 887.45 calponin 3, acidic [Source:MGI Symbol;Acc:MGI:1919244]
100. Cox8a ENSMUSG00000035885 85.41 887.45 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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