Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s67.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3642.85 37849.56 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2787.82 28965.71 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2406.29 25001.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2224.25 23110.17 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2210.69 22969.28 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2006.37 20846.38 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1259.79 13089.34 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 814.36 8461.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Actb ENSMUSG00000029580 763.04 7928.06 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. H19 ENSMUSG00000000031 739.80 7686.59 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co3 ENSMUSG00000064358 705.91 7334.47 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 685.58 7123.24 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Mdk ENSMUSG00000027239 577.12 5996.33 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Nd2 ENSMUSG00000064345 490.94 5100.91 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Hbb-y ENSMUSG00000052187 486.10 5050.63 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Rnr2 ENSMUSG00000064339 399.92 4155.21 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Igf2 ENSMUSG00000048583 378.62 3933.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Gm13340 ENSMUSG00000083563 350.53 3642.04 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Tubb5 ENSMUSG00000001525 324.39 3370.44 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Tuba1b ENSMUSG00000023004 315.67 3279.84 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Hmga2 ENSMUSG00000056758 298.24 3098.74 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hba-x ENSMUSG00000055609 256.61 2666.20 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
23. Npm1 ENSMUSG00000057113 253.70 2635.97 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Rpsa ENSMUSG00000032518 252.73 2625.89 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. mt-Nd5 ENSMUSG00000064367 230.46 2394.50 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. Tpt1 ENSMUSG00000060126 228.53 2374.45 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Pkm ENSMUSG00000032294 225.62 2344.21 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Hba-a1 ENSMUSG00000069919 216.91 2253.72 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
29. Ubb ENSMUSG00000019505 216.91 2253.72 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Chchd2 ENSMUSG00000070493 202.38 2102.75 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Hsp90ab1 ENSMUSG00000023944 197.54 2052.46 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Pbx1 ENSMUSG00000052534 195.60 2032.30 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Nedd4 ENSMUSG00000032216 194.63 2022.22 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Rpl4 ENSMUSG00000032399 193.67 2012.25 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Cfl1 ENSMUSG00000056201 187.86 1951.88 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
36. Grb10 ENSMUSG00000020176 167.52 1740.55 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Eif4g2 ENSMUSG00000005610 164.62 1710.42 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Col1a1 ENSMUSG00000001506 157.84 1639.97 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
39. Col3a1 ENSMUSG00000026043 156.87 1629.89 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
40. Rpl23 ENSMUSG00000071415 153.96 1599.66 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Plagl1 ENSMUSG00000019817 152.03 1579.61 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
42. Rps20 ENSMUSG00000028234 150.09 1559.45 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Ywhab ENSMUSG00000018326 147.19 1529.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
44. Myl6 ENSMUSG00000090841 141.38 1468.95 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
45. Eef1b2 ENSMUSG00000025967 138.47 1438.72 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Fkbp1a ENSMUSG00000032966 135.57 1408.59 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Hnrnpc ENSMUSG00000060373 131.69 1368.27 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Hsp90aa1 ENSMUSG00000021270 126.85 1317.98 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Ngfrap1 126.85 1317.98 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
50. Eif5a ENSMUSG00000078812 125.88 1307.91 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Set ENSMUSG00000054766 125.88 1307.91 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
52. Cdkn1c ENSMUSG00000037664 124.91 1297.83 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
53. Ran ENSMUSG00000029430 124.91 1297.83 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Meg3 ENSMUSG00000021268 123.95 1287.85 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
55. Sfrp1 ENSMUSG00000031548 122.98 1277.77 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
56. Gm10800 ENSMUSG00000075014 122.01 1267.70 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
57. Trim28 ENSMUSG00000005566 116.20 1207.33 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
58. Hba-a2 ENSMUSG00000069917 114.26 1187.17 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
59. Igfbp5 ENSMUSG00000026185 112.33 1167.12 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
60. Peg3 ENSMUSG00000002265 112.33 1167.12 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
61. Hmgn1 ENSMUSG00000040681 111.36 1157.04 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
62. Atp5g3 ENSMUSG00000018770 110.39 1146.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
63. Paics ENSMUSG00000029247 109.42 1136.88 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
64. Sub1 ENSMUSG00000022205 109.42 1136.88 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
65. Hbb-bh1 ENSMUSG00000052217 106.52 1106.75 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
66. Igfbp4 ENSMUSG00000017493 106.52 1106.75 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
67. Rpl18a ENSMUSG00000045128 106.52 1106.75 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Eef2 ENSMUSG00000034994 105.55 1096.67 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
69. Gm5805 ENSMUSG00000061848 104.58 1086.60 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
70. H3f3b ENSMUSG00000016559 104.58 1086.60 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
71. Ybx1 ENSMUSG00000028639 104.58 1086.60 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
72. Cdk4 ENSMUSG00000006728 103.61 1076.52 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
73. Banf1 ENSMUSG00000024844 101.67 1056.36 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
74. U2af2 ENSMUSG00000030435 99.74 1036.31 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
75. Rps26 ENSMUSG00000025362 98.77 1026.23 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
76. Rpl37 ENSMUSG00000041841 95.86 995.99 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
77. Rps4x ENSMUSG00000031320 95.86 995.99 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
78. Ddx5 ENSMUSG00000020719 94.90 986.02 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Rps5 ENSMUSG00000012848 94.90 986.02 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Tsc22d1 ENSMUSG00000022010 94.90 986.02 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
81. Ndufa12 ENSMUSG00000020022 93.93 975.94 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Pcbp1 ENSMUSG00000051695 93.93 975.94 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
83. Lamp1 ENSMUSG00000031447 92.96 965.86 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
84. Ago2 ENSMUSG00000036698 91.02 945.71 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
85. Hnrnpa2b1 ENSMUSG00000004980 91.02 945.71 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
86. Kpnb1 ENSMUSG00000001440 91.02 945.71 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
87. Rpl41 ENSMUSG00000093674 91.02 945.71 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
88. Col1a2 ENSMUSG00000029661 90.05 935.63 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
89. Lbh ENSMUSG00000024063 90.05 935.63 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
90. Rps3a1 ENSMUSG00000028081 88.12 915.58 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
91. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 87.15 905.50 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
92. Rpl32 ENSMUSG00000057841 87.15 905.50 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
93. Oaz1 ENSMUSG00000035242 86.18 895.42 ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 85.21 885.34 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Anp32b ENSMUSG00000028333 82.31 855.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Pabpc1 ENSMUSG00000022283 82.31 855.21 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
97. Rrm2 ENSMUSG00000020649 82.31 855.21 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
98. Sparc ENSMUSG00000018593 82.31 855.21 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
99. Top2a ENSMUSG00000020914 82.31 855.21 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
100. Rplp1 ENSMUSG00000007892 81.34 845.13 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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