Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s65.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3492.32 36282.48 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 2420.67 25148.87 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. mt-Atp6 ENSMUSG00000064357 2370.24 24624.95 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2269.38 23577.09 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 2130.70 22136.31 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 2105.48 21874.30 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1285.98 13360.33 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Actb ENSMUSG00000029580 1059.04 11002.60 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Rnr2 ENSMUSG00000064339 882.54 9168.90 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Nd3 ENSMUSG00000064360 819.50 8513.97 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Co3 ENSMUSG00000064358 806.89 8382.96 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd2 ENSMUSG00000064345 743.85 7728.02 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Mdk ENSMUSG00000027239 693.42 7204.09 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Eef1a1 ENSMUSG00000037742 668.21 6942.18 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. H19 ENSMUSG00000000031 642.99 6680.17 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Gm10800 ENSMUSG00000075014 466.48 4846.36 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. Igf2 ENSMUSG00000048583 466.48 4846.36 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Hmga2 ENSMUSG00000056758 416.05 4322.44 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. mt-Nd5 ENSMUSG00000064367 378.23 3929.51 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Tuba1b ENSMUSG00000023004 365.62 3798.51 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Gm13340 ENSMUSG00000083563 353.01 3667.50 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Hbb-y ENSMUSG00000052187 353.01 3667.50 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Cfl1 ENSMUSG00000056201 277.37 2881.66 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Pbx1 ENSMUSG00000052534 277.37 2881.66 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
25. Hsp90ab1 ENSMUSG00000023944 252.15 2619.64 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
26. Npm1 ENSMUSG00000057113 252.15 2619.64 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Tpt1 ENSMUSG00000060126 252.15 2619.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Tubb5 ENSMUSG00000001525 252.15 2619.64 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Ngfrap1 226.94 2357.73 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
30. Rpsa ENSMUSG00000032518 226.94 2357.73 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Hba-a1 ENSMUSG00000069919 201.72 2095.71 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Set ENSMUSG00000054766 201.72 2095.71 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Chchd2 ENSMUSG00000070493 176.51 1833.80 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Nedd4 ENSMUSG00000032216 176.51 1833.80 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Peg3 ENSMUSG00000002265 176.51 1833.80 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
36. Pkm ENSMUSG00000032294 176.51 1833.80 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
37. Ubb ENSMUSG00000019505 176.51 1833.80 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
38. Grb10 ENSMUSG00000020176 163.90 1702.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Myl6 ENSMUSG00000090841 163.90 1702.79 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
40. Ywhab ENSMUSG00000018326 163.90 1702.79 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
41. Atp5g3 ENSMUSG00000018770 151.29 1571.79 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Hba-x ENSMUSG00000055609 151.29 1571.79 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
43. Igfbp5 ENSMUSG00000026185 151.29 1571.79 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
44. Rps26 ENSMUSG00000025362 151.29 1571.79 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Sfrp1 ENSMUSG00000031548 151.29 1571.79 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
46. Cdk4 ENSMUSG00000006728 138.68 1440.78 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
47. Cdkn1c ENSMUSG00000037664 138.68 1440.78 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
48. Col3a1 ENSMUSG00000026043 138.68 1440.78 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Marcks ENSMUSG00000069662 138.68 1440.78 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
50. Pabpc1 ENSMUSG00000022283 138.68 1440.78 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
51. Plagl1 ENSMUSG00000019817 138.68 1440.78 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
52. Ran ENSMUSG00000029430 138.68 1440.78 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Rpl4 ENSMUSG00000032399 138.68 1440.78 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
54. Ccnd2 ENSMUSG00000000184 126.08 1309.87 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
55. Col1a1 ENSMUSG00000001506 126.08 1309.87 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
56. Eif4g2 ENSMUSG00000005610 126.08 1309.87 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
57. Hbb-bh1 ENSMUSG00000052217 126.08 1309.87 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
58. Hnrnpa2b1 ENSMUSG00000004980 126.08 1309.87 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
59. Hnrnpc ENSMUSG00000060373 126.08 1309.87 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Meg3 ENSMUSG00000021268 126.08 1309.87 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
61. Serbp1 ENSMUSG00000036371 126.08 1309.87 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
62. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 126.08 1309.87 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
63. Sparc ENSMUSG00000018593 126.08 1309.87 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
64. Ago2 ENSMUSG00000036698 113.47 1178.86 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
65. Jund ENSMUSG00000071076, ENSMUSG00000110974 113.47 1178.86 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
66. Malat1 ENSMUSG00000092341 113.47 1178.86 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
67. Rps20 ENSMUSG00000028234 113.47 1178.86 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
68. Rps3a1 ENSMUSG00000028081 113.47 1178.86 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Tmpo ENSMUSG00000019961 113.47 1178.86 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
70. Atxn7l3b ENSMUSG00000074748 100.86 1047.86 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
71. Banf1 ENSMUSG00000024844 100.86 1047.86 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Eif5a ENSMUSG00000078812 100.86 1047.86 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
73. Fkbp1a ENSMUSG00000032966 100.86 1047.86 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
74. Gm14303 ENSMUSG00000081344 100.86 1047.86 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
75. Gm8738 ENSMUSG00000092540 100.86 1047.86 predicted gene 8738 [Source:MGI Symbol;Acc:MGI:3644778]
76. Hmgn1 ENSMUSG00000040681 100.86 1047.86 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
77. Hnrnph1 ENSMUSG00000007850 100.86 1047.86 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
78. Lamp1 ENSMUSG00000031447 100.86 1047.86 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
79. Pcbp1 ENSMUSG00000051695 100.86 1047.86 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
80. Rps4x ENSMUSG00000031320 100.86 1047.86 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
81. Tmsb4x ENSMUSG00000049775 100.86 1047.86 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
82. U2af2 ENSMUSG00000030435 100.86 1047.86 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
83. Ywhae ENSMUSG00000020849 100.86 1047.86 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. 2810417H13Rik 88.25 916.85 RIKEN cDNA 2810417H13 gene
85. Arid1a ENSMUSG00000007880 88.25 916.85 AT rich interactive domain 1A (SWI-like) [Source:MGI Symbol;Acc:MGI:1935147]
86. Cks1b ENSMUSG00000028044 88.25 916.85 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
87. Ddx5 ENSMUSG00000020719 88.25 916.85 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
88. Dynll1 ENSMUSG00000009013 88.25 916.85 dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]
89. Eef1g ENSMUSG00000071644 88.25 916.85 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
90. Gm5963 ENSMUSG00000052192 88.25 916.85 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
91. Gm8292 ENSMUSG00000100215 88.25 916.85 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
92. Marcksl1 ENSMUSG00000047945 88.25 916.85 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
93. Meis2 ENSMUSG00000027210 88.25 916.85 Meis homeobox 2 [Source:MGI Symbol;Acc:MGI:108564]
94. Mtpn ENSMUSG00000029840 88.25 916.85 myotrophin [Source:MGI Symbol;Acc:MGI:99445]
95. Nucks1 ENSMUSG00000026434 88.25 916.85 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
96. Paics ENSMUSG00000029247 88.25 916.85 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
97. Rpl18a ENSMUSG00000045128 88.25 916.85 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
98. Rpl22 ENSMUSG00000028936 88.25 916.85 ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:99262]
99. Rpl26 ENSMUSG00000060938 88.25 916.85 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Rpl32 ENSMUSG00000057841 88.25 916.85 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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