Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s63.

Sample reads: 96,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2965.58 30816.65 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 2690.75 27960.77 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. mt-Atp6 ENSMUSG00000064357 2653.17 27570.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2567.43 26679.30 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2480.52 25776.18 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 2408.87 25031.63 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1528.01 15878.22 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 838.58 8714.05 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Co3 ENSMUSG00000064358 820.97 8531.06 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. mt-Rnr2 ENSMUSG00000064339 765.77 7957.45 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Gm10800 ENSMUSG00000075014 711.74 7396.00 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
12. Actb ENSMUSG00000029580 636.57 6614.88 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd2 ENSMUSG00000064345 624.83 6492.88 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. H19 ENSMUSG00000000031 582.55 6053.53 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Eef1a1 ENSMUSG00000037742 575.50 5980.27 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 475.67 4942.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Mdk ENSMUSG00000027239 454.53 4723.22 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Gm13340 ENSMUSG00000083563 395.80 4112.93 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 340.60 3539.32 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Tuba1b ENSMUSG00000023004 268.96 2794.88 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Npm1 ENSMUSG00000057113 252.51 2623.94 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. mt-Nd5 ENSMUSG00000064367 230.20 2392.11 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Nedd4 ENSMUSG00000032216 220.80 2294.43 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Tubb5 ENSMUSG00000001525 212.58 2209.01 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Cfl1 ENSMUSG00000056201 207.88 2160.17 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Pbx1 ENSMUSG00000052534 207.88 2160.17 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
27. Rpsa ENSMUSG00000032518 205.54 2135.86 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Ubb ENSMUSG00000019505 196.14 2038.18 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Hsp90ab1 ENSMUSG00000023944 192.62 2001.60 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Grb10 ENSMUSG00000020176 191.44 1989.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
31. Pkm ENSMUSG00000032294 190.27 1977.18 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Tpt1 ENSMUSG00000060126 186.74 1940.50 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Peg3 ENSMUSG00000002265 184.39 1916.08 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Col3a1 ENSMUSG00000026043 182.05 1891.76 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
35. Hbb-y ENSMUSG00000052187 169.13 1757.50 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
36. Rpl4 ENSMUSG00000032399 157.38 1635.40 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Eif4g2 ENSMUSG00000005610 155.03 1610.98 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Set ENSMUSG00000054766 149.16 1549.99 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
39. Ngfrap1 146.81 1525.57 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
40. Ybx1 ENSMUSG00000028639 145.64 1513.41 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Hmgn1 ENSMUSG00000040681 144.46 1501.15 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
42. Wbp5 143.29 1488.99 WW domain binding protein 5
43. Hnrnpc ENSMUSG00000060373 140.94 1464.57 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Rps26 ENSMUSG00000025362 140.94 1464.57 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Chchd2 ENSMUSG00000070493 138.59 1440.15 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Atp5g3 ENSMUSG00000018770 135.07 1403.57 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Myl6 ENSMUSG00000090841 135.07 1403.57 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
48. Rpl23 ENSMUSG00000071415 133.89 1391.31 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. Gm17132 ENSMUSG00000061331 132.72 1379.15 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
50. Plagl1 ENSMUSG00000019817 132.72 1379.15 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
51. Ywhab ENSMUSG00000018326 132.72 1379.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Sfrp1 ENSMUSG00000031548 124.50 1293.73 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
53. Col1a2 ENSMUSG00000029661 123.32 1281.47 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
54. Eif5a ENSMUSG00000078812 123.32 1281.47 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Eef1b2 ENSMUSG00000025967 120.97 1257.05 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Meg3 ENSMUSG00000021268 119.80 1244.89 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
57. U2af2 ENSMUSG00000030435 119.80 1244.89 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Col1a1 ENSMUSG00000001506 112.75 1171.63 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
59. Hsp90aa1 ENSMUSG00000021270 112.75 1171.63 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Igfbp5 ENSMUSG00000026185 112.75 1171.63 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
61. Rpl41 ENSMUSG00000093674 111.58 1159.48 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
62. Rps20 ENSMUSG00000028234 105.70 1098.38 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
63. Malat1 ENSMUSG00000092341 103.35 1073.96 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
64. Ran ENSMUSG00000029430 103.35 1073.96 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
65. Gm5805 ENSMUSG00000061848 101.01 1049.64 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
66. Rplp1 ENSMUSG00000007892 101.01 1049.64 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
67. Banf1 ENSMUSG00000024844 97.48 1012.96 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
68. Pabpc1 ENSMUSG00000022283 97.48 1012.96 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
69. Rps3a1 ENSMUSG00000028081 97.48 1012.96 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
70. Marcks ENSMUSG00000069662 95.13 988.54 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
71. Rps9 ENSMUSG00000006333 95.13 988.54 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
72. Fkbp1a ENSMUSG00000032966 93.96 976.38 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
73. Sparc ENSMUSG00000018593 93.96 976.38 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
74. Tpm1 ENSMUSG00000032366 92.78 964.12 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
75. Trim28 ENSMUSG00000005566 92.78 964.12 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Cdkn1c ENSMUSG00000037664 89.26 927.54 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
77. Anp32b ENSMUSG00000028333 86.91 903.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
78. Rpl37 ENSMUSG00000041841 86.91 903.12 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Rps4x ENSMUSG00000031320 86.91 903.12 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
80. H3f3b ENSMUSG00000016559 85.74 890.96 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
81. Paics ENSMUSG00000029247 85.74 890.96 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
82. Rpl18a ENSMUSG00000045128 85.74 890.96 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
83. Rps5 ENSMUSG00000012848 85.74 890.96 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
84. Pcbp1 ENSMUSG00000051695 84.56 878.70 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
85. Gpc3 ENSMUSG00000055653 83.39 866.54 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
86. Lamp1 ENSMUSG00000031447 82.21 854.28 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
87. Ndufa12 ENSMUSG00000020022 82.21 854.28 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
88. Sub1 ENSMUSG00000022205 82.21 854.28 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
89. Top1 ENSMUSG00000070544 82.21 854.28 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
90. mt-Rnr1 ENSMUSG00000064337 82.21 854.28 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
91. Hba-a1 ENSMUSG00000069919 81.04 842.12 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
92. Hnrnpa2b1 ENSMUSG00000004980 81.04 842.12 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
93. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 81.04 842.12 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
94. 2810417H13Rik 79.87 829.96 RIKEN cDNA 2810417H13 gene
95. Crabp1 ENSMUSG00000032291 79.87 829.96 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
96. Son ENSMUSG00000022961 79.87 829.96 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
97. Tmpo ENSMUSG00000019961 79.87 829.96 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
98. Cox8a ENSMUSG00000035885 78.69 817.70 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
99. Hba-x ENSMUSG00000055609 78.69 817.70 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
100. Hnrnpa0 ENSMUSG00000007836 77.52 805.54 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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