Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s59.

Sample reads: 96,263. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3981.80 41363.96 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Co2 ENSMUSG00000064354 2783.74 28918.21 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
3. mt-Atp6 ENSMUSG00000064357 2759.42 28665.56 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2635.73 27380.64 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. Ptma ENSMUSG00000026238 2256.91 23445.36 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd4 ENSMUSG00000064363 2144.09 22273.36 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1537.04 15967.17 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co3 ENSMUSG00000064358 966.73 10042.64 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
9. mt-Nd3 ENSMUSG00000064360 936.19 9725.38 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 758.69 7881.47 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Rnr2 ENSMUSG00000064339 622.58 6467.52 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. mt-Nd2 ENSMUSG00000064345 569.79 5919.12 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Eef1a1 ENSMUSG00000037742 527.35 5478.25 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 524.77 5451.45 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Igf2 ENSMUSG00000048583 444.55 4618.10 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Mdk ENSMUSG00000027239 431.61 4483.68 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Gm13340 ENSMUSG00000083563 423.33 4397.66 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hmga2 ENSMUSG00000056758 277.91 2887.00 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Pkm ENSMUSG00000032294 266.01 2763.38 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. mt-Nd5 ENSMUSG00000064367 259.80 2698.87 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Npm1 ENSMUSG00000057113 238.06 2473.03 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Cfl1 ENSMUSG00000056201 232.37 2413.92 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Hbb-y ENSMUSG00000052187 208.56 2166.57 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. Tpt1 ENSMUSG00000060126 208.56 2166.57 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
25. Hsp90ab1 ENSMUSG00000023944 203.39 2112.87 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
26. Rpsa ENSMUSG00000032518 200.28 2080.56 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Tubb5 ENSMUSG00000001525 199.76 2075.16 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Tuba1b ENSMUSG00000023004 198.73 2064.46 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Peg3 ENSMUSG00000002265 197.69 2053.65 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
30. Rpl4 ENSMUSG00000032399 193.04 2005.35 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Nedd4 ENSMUSG00000032216 182.17 1892.43 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Ubb ENSMUSG00000019505 178.54 1854.72 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Pbx1 ENSMUSG00000052534 157.84 1639.68 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. Itga6 ENSMUSG00000027111 155.77 1618.18 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
35. Rps26 ENSMUSG00000025362 142.32 1478.46 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
36. Rpl23 ENSMUSG00000071415 140.25 1456.95 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Rpl18a ENSMUSG00000045128 139.21 1446.15 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Chchd2 ENSMUSG00000070493 138.18 1435.45 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Eif4g2 ENSMUSG00000005610 136.11 1413.95 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Tsc22d1 ENSMUSG00000022010 135.07 1403.14 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
41. Rps20 ENSMUSG00000028234 132.49 1376.34 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Grb10 ENSMUSG00000020176 131.97 1370.94 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Eef1b2 ENSMUSG00000025967 128.86 1338.63 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Atp5g3 ENSMUSG00000018770 128.35 1333.33 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Ybx1 ENSMUSG00000028639 126.79 1317.13 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Wbp5 125.76 1306.43 WW domain binding protein 5
47. Fkbp1a ENSMUSG00000032966 124.72 1295.62 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. U2af2 ENSMUSG00000030435 123.17 1279.52 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Trim28 ENSMUSG00000005566 121.62 1263.42 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
50. Ywhab ENSMUSG00000018326 120.58 1252.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Gm5805 ENSMUSG00000061848 120.06 1247.21 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
52. Hnrnpc ENSMUSG00000060373 117.48 1220.41 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Hsp90aa1 ENSMUSG00000021270 117.48 1220.41 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Ngfrap1 116.96 1215.01 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
55. Myl6 ENSMUSG00000090841 113.85 1182.70 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
56. Set ENSMUSG00000054766 111.78 1161.20 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Rplp1 ENSMUSG00000007892 110.75 1150.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Rpl41 ENSMUSG00000093674 109.71 1139.70 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
59. Col3a1 ENSMUSG00000026043 104.54 1085.99 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
60. Eif5a ENSMUSG00000078812 104.02 1080.59 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
61. Lamp1 ENSMUSG00000031447 104.02 1080.59 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
62. Rps4x ENSMUSG00000031320 104.02 1080.59 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. Pabpc1 ENSMUSG00000022283 101.43 1053.68 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Sparc ENSMUSG00000018593 100.92 1048.38 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
65. Cdkn1c ENSMUSG00000037664 97.29 1010.67 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
66. Paics ENSMUSG00000029247 96.78 1005.38 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Pcbp1 ENSMUSG00000051695 96.78 1005.38 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
68. Bmyc ENSMUSG00000049086 96.26 999.97 brain expressed myelocytomatosis oncogene [Source:MGI Symbol;Acc:MGI:88184]
69. Rpl37 ENSMUSG00000041841 96.26 999.97 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
70. Gm14303 ENSMUSG00000081344 95.22 989.17 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
71. Hmgn1 ENSMUSG00000040681 95.22 989.17 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
72. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 94.71 983.87 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
73. Hba-a1 ENSMUSG00000069919 93.15 967.67 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.15 967.67 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Son ENSMUSG00000022961 90.57 940.86 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
76. Ran ENSMUSG00000029430 90.05 935.46 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
77. Anp32b ENSMUSG00000028333 87.98 913.96 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
78. Rpl32 ENSMUSG00000057841 87.46 908.56 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
79. Rpl8 ENSMUSG00000003970 86.94 903.16 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
80. Rps5 ENSMUSG00000012848 86.94 903.16 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
81. Rps9 ENSMUSG00000006333 86.94 903.16 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
82. Col1a1 ENSMUSG00000001506 86.43 897.86 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
83. H3f3b ENSMUSG00000016559 85.91 892.46 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
84. Sfrp1 ENSMUSG00000031548 85.39 887.05 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
85. Ago2 ENSMUSG00000036698 84.36 876.35 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
86. Hba-x ENSMUSG00000055609 83.32 865.55 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
87. Ywhae ENSMUSG00000020849 80.73 838.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
88. Hnrnpa2b1 ENSMUSG00000004980 80.22 833.35 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
89. Jund ENSMUSG00000071076, ENSMUSG00000110974 79.70 827.94 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
90. Tmpo ENSMUSG00000019961 79.70 827.94 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
91. Col1a2 ENSMUSG00000029661 78.66 817.14 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
92. Tpm1 ENSMUSG00000032366 77.63 806.44 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
93. Wt1 ENSMUSG00000016458 77.11 801.04 Wilms tumor 1 homolog [Source:MGI Symbol;Acc:MGI:98968]
94. Ndufa12 ENSMUSG00000020022 76.59 795.64 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
95. Banf1 ENSMUSG00000024844 75.56 784.94 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
96. Marcks ENSMUSG00000069662 75.56 784.94 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
97. Rps3a1 ENSMUSG00000028081 75.04 779.53 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
98. Eef2 ENSMUSG00000034994 74.52 774.13 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
99. Rpl26 ENSMUSG00000060938 73.49 763.43 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Hnrnpk ENSMUSG00000021546 72.45 752.63 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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