Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s58.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4535.26 47126.54 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 3632.03 37740.95 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Co2 ENSMUSG00000064354 3282.05 34104.26 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd4 ENSMUSG00000064363 3113.93 32357.30 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2942.76 30578.64 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. Ptma ENSMUSG00000026238 2225.22 23122.58 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1837.79 19096.74 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 1140.88 11855.05 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Co3 ENSMUSG00000064358 966.66 10044.70 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. mt-Rnr2 ENSMUSG00000064339 868.84 9028.24 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. mt-Nd2 ENSMUSG00000064345 806.18 8377.13 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. H19 ENSMUSG00000000031 661.76 6876.44 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Actb ENSMUSG00000029580 635.78 6606.48 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Mdk ENSMUSG00000027239 576.17 5987.07 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 573.12 5955.37 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Gm13340 ENSMUSG00000083563 516.57 5367.75 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Igf2 ENSMUSG00000048583 340.05 3533.51 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. mt-Nd5 ENSMUSG00000064367 335.46 3485.81 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Hmga2 ENSMUSG00000056758 327.06 3398.53 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Hbb-y ENSMUSG00000052187 291.14 3025.28 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Npm1 ENSMUSG00000057113 246.06 2556.85 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 226.95 2358.27 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Peg3 ENSMUSG00000002265 220.84 2294.78 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
24. Pkm ENSMUSG00000032294 201.74 2096.31 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Rpsa ENSMUSG00000032518 201.74 2096.31 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Nedd4 ENSMUSG00000032216 194.86 2024.82 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Ubb ENSMUSG00000019505 181.87 1889.84 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Hsp90ab1 ENSMUSG00000023944 178.05 1850.14 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Cfl1 ENSMUSG00000056201 171.17 1778.65 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Tpt1 ENSMUSG00000060126 169.64 1762.75 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Rps26 ENSMUSG00000025362 164.29 1707.16 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
32. Tsc22d1 ENSMUSG00000022010 154.36 1603.98 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
33. Itga6 ENSMUSG00000027111 152.83 1588.08 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
34. Pbx1 ENSMUSG00000052534 152.07 1580.18 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
35. Hba-a1 ENSMUSG00000069919 151.30 1572.18 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
36. Rpl4 ENSMUSG00000032399 149.77 1556.28 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Rps20 ENSMUSG00000028234 146.72 1524.59 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Gm10800 ENSMUSG00000075014 145.19 1508.69 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
39. Hba-x ENSMUSG00000055609 143.66 1492.79 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
40. Rpl18a ENSMUSG00000045128 139.08 1445.20 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
41. Chchd2 ENSMUSG00000070493 137.55 1429.30 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Atp5g3 ENSMUSG00000018770 131.43 1365.71 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Tubb5 ENSMUSG00000001525 131.43 1365.71 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
44. Grb10 ENSMUSG00000020176 129.91 1349.91 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Eif4g2 ENSMUSG00000005610 126.85 1318.12 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
46. Hnrnpc ENSMUSG00000060373 123.79 1286.32 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Rpl23 ENSMUSG00000071415 123.03 1278.42 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Ybx1 ENSMUSG00000028639 119.97 1246.63 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
49. Ywhab ENSMUSG00000018326 116.15 1206.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Set ENSMUSG00000054766 115.39 1199.03 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
51. Wbp5 114.62 1191.03 WW domain binding protein 5
52. Gm5805 ENSMUSG00000061848 113.86 1183.14 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
53. Banf1 ENSMUSG00000024844 111.57 1159.34 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Ran ENSMUSG00000029430 111.57 1159.34 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
55. mt-Rnr1 ENSMUSG00000064337 111.57 1159.34 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
56. Hsp90aa1 ENSMUSG00000021270 110.80 1151.34 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Fkbp1a ENSMUSG00000032966 105.45 1095.75 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Eef1b2 ENSMUSG00000025967 104.69 1087.85 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
59. Myl6 ENSMUSG00000090841 104.69 1087.85 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. Paics ENSMUSG00000029247 104.69 1087.85 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Rps5 ENSMUSG00000012848 100.87 1048.15 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
62. Eif5a ENSMUSG00000078812 100.10 1040.15 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
63. Gm14303 ENSMUSG00000081344 99.34 1032.26 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
64. Trim28 ENSMUSG00000005566 97.81 1016.36 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. Rps4x ENSMUSG00000031320 96.28 1000.46 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Sfrp1 ENSMUSG00000031548 95.52 992.56 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
67. Hmgn1 ENSMUSG00000040681 93.23 968.77 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
68. Col3a1 ENSMUSG00000026043 92.46 960.77 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
69. Rpl26 ENSMUSG00000060938 92.46 960.77 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
70. Cdkn1c ENSMUSG00000037664 91.70 952.87 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
71. Col1a2 ENSMUSG00000029661 90.17 936.97 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
72. Ndufa12 ENSMUSG00000020022 90.17 936.97 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Son ENSMUSG00000022961 88.64 921.07 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
74. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 85.59 889.38 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
75. Rpl37 ENSMUSG00000041841 85.59 889.38 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
76. Rps3a1 ENSMUSG00000028081 85.59 889.38 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
77. Rplp1 ENSMUSG00000007892 84.82 881.38 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
78. Eef2 ENSMUSG00000034994 84.06 873.48 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
79. Tecr ENSMUSG00000031708 84.06 873.48 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
80. Gpc3 ENSMUSG00000055653 83.29 865.48 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
81. U2af2 ENSMUSG00000030435 83.29 865.48 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
82. H2afy ENSMUSG00000015937 81.76 849.58 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
83. Lamp1 ENSMUSG00000031447 81.76 849.58 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
84. Pabpc1 ENSMUSG00000022283 81.00 841.68 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
85. Cdk4 ENSMUSG00000006728 80.24 833.79 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
86. Ngfrap1 79.47 825.78 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
87. Pcbp1 ENSMUSG00000051695 79.47 825.78 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
88. Bmyc ENSMUSG00000049086 78.71 817.89 brain expressed myelocytomatosis oncogene [Source:MGI Symbol;Acc:MGI:88184]
89. Hbb-bh1 ENSMUSG00000052217 78.71 817.89 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
90. Ddx5 ENSMUSG00000020719 77.94 809.89 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
91. H3f3b ENSMUSG00000016559 77.94 809.89 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
92. Marcks ENSMUSG00000069662 77.18 801.99 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
93. Rpl32 ENSMUSG00000057841 76.42 794.09 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 76.42 794.09 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Ifitm1 ENSMUSG00000025491 74.89 778.19 interferon induced transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:1915963]
96. Sub1 ENSMUSG00000022205 74.89 778.19 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
97. Cox8a ENSMUSG00000035885 74.12 770.19 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
98. Rps9 ENSMUSG00000006333 72.59 754.29 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
99. Sparc ENSMUSG00000018593 72.59 754.29 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
100. Morf4l2 ENSMUSG00000031422 71.83 746.40 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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