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Experiment Mouse_E11_5_slice_2, section s57.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4366.27 45361.04 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Co2 ENSMUSG00000064354 3134.17 32560.79 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
3. mt-Nd4 ENSMUSG00000064363 2766.74 28743.57 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. Ptma ENSMUSG00000026238 2755.14 28623.06 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Atp6 ENSMUSG00000064357 2702.99 28081.27 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd1 ENSMUSG00000064341 2672.27 27762.13 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1539.84 15997.35 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 968.42 10060.88 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Rnr2 ENSMUSG00000064339 959.72 9970.50 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Co3 ENSMUSG00000064358 908.14 9434.64 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Nd2 ENSMUSG00000064345 806.72 8380.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. H19 ENSMUSG00000000031 588.24 6111.21 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Eef1a1 ENSMUSG00000037742 547.67 5689.73 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Mdk ENSMUSG00000027239 547.67 5689.73 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Actb ENSMUSG00000029580 535.50 5563.29 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Hbb-y ENSMUSG00000052187 527.96 5484.96 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Gm13340 ENSMUSG00000083563 422.49 4389.23 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Igf2 ENSMUSG00000048583 411.48 4274.85 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Hmga2 ENSMUSG00000056758 319.33 3317.51 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Hba-a1 ENSMUSG00000069919 273.54 2841.80 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
21. Tuba1b ENSMUSG00000023004 261.37 2715.36 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Npm1 ENSMUSG00000057113 255.00 2649.19 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. mt-Nd5 ENSMUSG00000064367 240.51 2498.65 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Hba-x ENSMUSG00000055609 218.49 2269.89 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
25. Rpsa ENSMUSG00000032518 218.49 2269.89 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Nedd4 ENSMUSG00000032216 201.10 2089.22 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Ubb ENSMUSG00000019505 199.94 2077.17 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Pkm ENSMUSG00000032294 198.20 2059.09 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Hsp90ab1 ENSMUSG00000023944 188.35 1956.76 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. mt-Rnr1 ENSMUSG00000064337 187.77 1950.74 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
31. Peg3 ENSMUSG00000002265 184.87 1920.61 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Cfl1 ENSMUSG00000056201 183.14 1902.64 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Tpt1 ENSMUSG00000060126 179.66 1866.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Tubb5 ENSMUSG00000001525 172.12 1788.15 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Rpl4 ENSMUSG00000032399 155.90 1619.64 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Eif4g2 ENSMUSG00000005610 151.26 1571.44 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Hbb-bh1 ENSMUSG00000052217 150.68 1565.41 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
38. Chchd2 ENSMUSG00000070493 150.10 1559.38 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Itga6 ENSMUSG00000027111 147.78 1535.28 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
40. Rpl23 ENSMUSG00000071415 146.04 1517.20 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Pbx1 ENSMUSG00000052534 143.73 1493.21 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Ybx1 ENSMUSG00000028639 139.67 1451.03 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Atp5g3 ENSMUSG00000018770 137.35 1426.92 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Rpl18a ENSMUSG00000045128 137.35 1426.92 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
45. Set ENSMUSG00000054766 135.61 1408.85 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Ywhab ENSMUSG00000018326 128.08 1330.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Gm5805 ENSMUSG00000061848 127.50 1324.59 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
48. Hsp90aa1 ENSMUSG00000021270 127.50 1324.59 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Rps26 ENSMUSG00000025362 127.50 1324.59 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Rps20 ENSMUSG00000028234 126.34 1312.54 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Hnrnpc ENSMUSG00000060373 124.60 1294.47 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Wbp5 124.60 1294.47 WW domain binding protein 5
53. Eef1b2 ENSMUSG00000025967 123.44 1282.41 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Eif5a ENSMUSG00000078812 117.65 1222.26 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Grb10 ENSMUSG00000020176 117.07 1216.24 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
56. Tsc22d1 ENSMUSG00000022010 117.07 1216.24 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
57. Myl6 ENSMUSG00000090841 114.75 1192.13 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
58. U2af2 ENSMUSG00000030435 114.17 1186.11 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
59. Gm14303 ENSMUSG00000081344 113.01 1174.06 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
60. Ran ENSMUSG00000029430 113.01 1174.06 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Rps4x ENSMUSG00000031320 112.43 1168.03 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Rps5 ENSMUSG00000012848 110.11 1143.93 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Hba-a2 ENSMUSG00000069917 108.95 1131.88 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
64. Fkbp1a ENSMUSG00000032966 107.22 1113.91 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
65. Rplp1 ENSMUSG00000007892 106.06 1101.85 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Cdkn1c ENSMUSG00000037664 104.90 1089.80 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
67. Sparc ENSMUSG00000018593 98.52 1023.52 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
68. Paics ENSMUSG00000029247 95.62 993.39 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Ngfrap1 93.89 975.42 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
70. Pabpc1 ENSMUSG00000022283 93.31 969.39 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Lamp1 ENSMUSG00000031447 92.15 957.34 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
72. Rpl37 ENSMUSG00000041841 92.15 957.34 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
73. Hmgn1 ENSMUSG00000040681 91.57 951.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
74. Ndufa12 ENSMUSG00000020022 91.57 951.32 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
75. Banf1 ENSMUSG00000024844 90.99 945.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
76. Malat1 ENSMUSG00000092341 89.25 927.22 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
77. Rps3a1 ENSMUSG00000028081 88.67 921.19 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
78. Pcbp1 ENSMUSG00000051695 88.09 915.16 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. Sfrp1 ENSMUSG00000031548 88.09 915.16 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
80. Trim28 ENSMUSG00000005566 88.09 915.16 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Rpl32 ENSMUSG00000057841 86.35 897.09 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
82. Eef2 ENSMUSG00000034994 85.77 891.06 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
83. Ago2 ENSMUSG00000036698 84.61 879.01 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
84. Son ENSMUSG00000022961 84.03 872.98 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
85. Anp32b ENSMUSG00000028333 82.87 860.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
86. Bmyc ENSMUSG00000049086 82.87 860.93 brain expressed myelocytomatosis oncogene [Source:MGI Symbol;Acc:MGI:88184]
87. Col1a2 ENSMUSG00000029661 82.30 855.01 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
88. Gpc3 ENSMUSG00000055653 82.30 855.01 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
89. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 82.30 855.01 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
90. Cdk4 ENSMUSG00000006728 81.72 848.99 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
91. Col3a1 ENSMUSG00000026043 81.72 848.99 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
92. Tmsb4x ENSMUSG00000049775 81.72 848.99 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
93. Marcks ENSMUSG00000069662 81.14 842.96 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
94. Cox8a ENSMUSG00000035885 79.40 824.88 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
95. Hnrnpa0 ENSMUSG00000007836 76.50 794.76 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
96. Rpl8 ENSMUSG00000003970 75.92 788.73 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
97. Gm10800 ENSMUSG00000075014 75.34 782.70 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
98. H3f3b ENSMUSG00000016559 75.34 782.70 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
99. Rps9 ENSMUSG00000006333 75.34 782.70 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
100. Meg3 ENSMUSG00000021268 73.60 764.63 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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