Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s56.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3933.21 40861.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2741.54 28481.25 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Co2 ENSMUSG00000064354 2503.57 26009.04 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd4 ENSMUSG00000064363 2416.82 25107.81 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. Ptma ENSMUSG00000026238 2294.74 23839.55 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 2275.53 23639.98 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr2 ENSMUSG00000064339 1492.85 15508.89 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1452.57 15090.43 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd3 ENSMUSG00000064360 939.46 9759.84 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 857.66 8910.04 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Eef1a1 ENSMUSG00000037742 599.25 6225.48 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. H19 ENSMUSG00000000031 581.28 6038.79 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Mdk ENSMUSG00000027239 579.42 6019.47 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Nd2 ENSMUSG00000064345 559.59 5813.46 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Actb ENSMUSG00000029580 545.95 5671.75 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Igf2 ENSMUSG00000048583 433.79 4506.55 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 397.23 4126.73 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hmga2 ENSMUSG00000056758 382.97 3978.59 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Hbb-y ENSMUSG00000052187 352.61 3663.19 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Gm10800 ENSMUSG00000075014 307.37 3193.20 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Npm1 ENSMUSG00000057113 279.48 2903.46 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. mt-Nd5 ENSMUSG00000064367 252.84 2626.70 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Ubb ENSMUSG00000019505 237.34 2465.67 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
24. Rpsa ENSMUSG00000032518 235.48 2446.35 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Cfl1 ENSMUSG00000056201 228.05 2369.16 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Tuba1b ENSMUSG00000023004 224.95 2336.96 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Nedd4 ENSMUSG00000032216 215.65 2240.34 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Tpt1 ENSMUSG00000060126 215.65 2240.34 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Tubb5 ENSMUSG00000001525 213.80 2221.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Hba-a1 ENSMUSG00000069919 203.88 2118.06 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Chchd2 ENSMUSG00000070493 198.30 2060.09 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Hsp90ab1 ENSMUSG00000023944 181.57 1886.29 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Peg3 ENSMUSG00000002265 180.95 1879.85 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Ybx1 ENSMUSG00000028639 172.90 1796.22 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Pkm ENSMUSG00000032294 164.22 1706.05 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Atp5g3 ENSMUSG00000018770 158.02 1641.63 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Pbx1 ENSMUSG00000052534 155.54 1615.87 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
38. Rpl4 ENSMUSG00000032399 151.21 1570.89 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Hnrnpc ENSMUSG00000060373 147.49 1532.24 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Hba-x ENSMUSG00000055609 145.63 1512.92 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
41. Rpl23 ENSMUSG00000071415 145.01 1506.48 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Rps26 ENSMUSG00000025362 144.39 1500.04 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
43. Grb10 ENSMUSG00000020176 143.77 1493.59 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Eif5a ENSMUSG00000078812 143.15 1487.15 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Tsc22d1 ENSMUSG00000022010 141.91 1474.27 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
46. Eef1b2 ENSMUSG00000025967 137.57 1429.18 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Eif4g2 ENSMUSG00000005610 136.95 1422.74 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
48. Fkbp1a ENSMUSG00000032966 135.71 1409.86 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Hsp90aa1 ENSMUSG00000021270 135.09 1403.42 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Set ENSMUSG00000054766 131.38 1364.88 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
51. Wbp5 131.38 1364.88 WW domain binding protein 5
52. Ywhab ENSMUSG00000018326 131.38 1364.88 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Rps20 ENSMUSG00000028234 126.42 1313.35 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
54. Rps4x ENSMUSG00000031320 123.94 1287.59 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Sparc ENSMUSG00000018593 122.70 1274.70 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
56. U2af2 ENSMUSG00000030435 112.78 1171.65 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
57. Pabpc1 ENSMUSG00000022283 109.69 1139.55 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
58. Cdkn1c ENSMUSG00000037664 109.07 1133.10 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
59. Col3a1 ENSMUSG00000026043 108.45 1126.66 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
60. Gm5805 ENSMUSG00000061848 108.45 1126.66 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
61. Banf1 ENSMUSG00000024844 106.59 1107.34 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
62. Hbb-bh1 ENSMUSG00000052217 106.59 1107.34 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
63. Itga6 ENSMUSG00000027111 105.35 1094.46 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
64. Pcbp1 ENSMUSG00000051695 102.87 1068.69 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Rpl18a ENSMUSG00000045128 102.25 1062.25 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
66. Cdk4 ENSMUSG00000006728 101.63 1055.81 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Paics ENSMUSG00000029247 101.01 1049.37 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Ngfrap1 99.77 1036.49 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
69. Myl6 ENSMUSG00000090841 98.53 1023.61 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
70. Rplp1 ENSMUSG00000007892 98.53 1023.61 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
71. Trim28 ENSMUSG00000005566 97.29 1010.72 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
72. Lbh ENSMUSG00000024063 96.05 997.84 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
73. Gpc3 ENSMUSG00000055653 95.43 991.40 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
74. Ran ENSMUSG00000029430 94.81 984.96 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
75. Rps5 ENSMUSG00000012848 94.81 984.96 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
76. Meg3 ENSMUSG00000021268 93.57 972.08 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Ago2 ENSMUSG00000036698 92.95 965.64 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
78. Gm14303 ENSMUSG00000081344 92.95 965.64 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Sub1 ENSMUSG00000022205 92.95 965.64 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
80. Hmgn1 ENSMUSG00000040681 92.33 959.20 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Tmsb4x ENSMUSG00000049775 92.33 959.20 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
82. Rps3a1 ENSMUSG00000028081 91.10 946.42 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
83. Ywhae ENSMUSG00000020849 91.10 946.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Malat1 ENSMUSG00000092341 89.86 933.54 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
85. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 89.86 933.54 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
86. Son ENSMUSG00000022961 89.86 933.54 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
87. Hba-a2 ENSMUSG00000069917 89.24 927.09 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
88. Rpl37 ENSMUSG00000041841 89.24 927.09 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
89. Col1a2 ENSMUSG00000029661 86.76 901.33 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
90. Cox8a ENSMUSG00000035885 84.28 875.57 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
91. Hnrnpa2b1 ENSMUSG00000004980 83.04 862.68 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Rpl32 ENSMUSG00000057841 81.80 849.80 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
93. Tmpo ENSMUSG00000019961 81.80 849.80 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
94. Sfrp1 ENSMUSG00000031548 81.18 843.36 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
95. Anp32b ENSMUSG00000028333 80.56 836.92 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Morf4l2 ENSMUSG00000031422 78.08 811.16 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
97. Eef2 ENSMUSG00000034994 76.22 791.83 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
98. Rpl8 ENSMUSG00000003970 75.60 785.39 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
99. Hnrnpk ENSMUSG00000021546 74.98 778.95 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
100. H3f3b ENSMUSG00000016559 74.36 772.51 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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