Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s55.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3760.73 39069.12 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3003.23 31199.68 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2670.61 27744.18 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2649.54 27525.29 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2451.34 25466.25 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2364.77 24566.90 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1436.97 14928.26 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 931.78 9679.99 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Rnr2 ENSMUSG00000064339 903.87 9390.04 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Co3 ENSMUSG00000064358 887.36 9218.52 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. H19 ENSMUSG00000000031 788.26 8189.00 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. Actb ENSMUSG00000029580 693.71 7206.75 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Mdk ENSMUSG00000027239 676.05 7023.29 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Nd2 ENSMUSG00000064345 597.46 6206.84 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Eef1a1 ENSMUSG00000037742 568.41 5905.04 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 510.32 5301.56 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Hbb-y ENSMUSG00000052187 440.26 4573.73 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Hmga2 ENSMUSG00000056758 426.59 4431.72 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Gm13340 ENSMUSG00000083563 368.50 3828.24 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. mt-Nd5 ENSMUSG00000064367 349.13 3627.01 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Hba-x ENSMUSG00000055609 251.17 2609.33 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
22. Tubb5 ENSMUSG00000001525 250.60 2603.41 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Npm1 ENSMUSG00000057113 244.34 2538.38 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tuba1b ENSMUSG00000023004 232.38 2414.13 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Hba-a1 ENSMUSG00000069919 226.11 2348.99 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Cfl1 ENSMUSG00000056201 219.28 2278.04 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Rpsa ENSMUSG00000032518 209.02 2171.45 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Ubb ENSMUSG00000019505 201.05 2088.65 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Nedd4 ENSMUSG00000032216 197.06 2047.20 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Tpt1 ENSMUSG00000060126 185.67 1928.87 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Hsp90ab1 ENSMUSG00000023944 184.53 1917.03 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Gm10800 ENSMUSG00000075014 182.83 1899.37 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
33. Peg3 ENSMUSG00000002265 177.13 1840.15 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Pkm ENSMUSG00000032294 177.13 1840.15 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Pbx1 ENSMUSG00000052534 168.59 1751.43 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Fkbp1a ENSMUSG00000032966 161.18 1674.45 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
37. Rpl4 ENSMUSG00000032399 155.49 1615.34 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Chchd2 ENSMUSG00000070493 148.65 1544.28 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Rps20 ENSMUSG00000028234 145.80 1514.67 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Eif4g2 ENSMUSG00000005610 143.53 1491.09 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Set ENSMUSG00000054766 140.68 1461.48 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Grb10 ENSMUSG00000020176 134.41 1396.35 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Col3a1 ENSMUSG00000026043 133.84 1390.42 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
44. Ybx1 ENSMUSG00000028639 133.84 1390.42 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Rpl23 ENSMUSG00000071415 128.15 1331.31 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Rps26 ENSMUSG00000025362 127.58 1325.39 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Ywhab ENSMUSG00000018326 125.87 1307.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
48. Hnrnpc ENSMUSG00000060373 121.31 1260.25 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
49. Sparc ENSMUSG00000018593 121.31 1260.25 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
50. Cdkn1c ENSMUSG00000037664 119.61 1242.59 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
51. Myl6 ENSMUSG00000090841 119.61 1242.59 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Col1a2 ENSMUSG00000029661 116.76 1212.99 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
53. Eef1b2 ENSMUSG00000025967 113.34 1177.46 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Eif5a ENSMUSG00000078812 109.35 1136.01 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Paics ENSMUSG00000029247 109.35 1136.01 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Gm5805 ENSMUSG00000061848 108.78 1130.08 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
57. Col1a1 ENSMUSG00000001506 108.21 1124.16 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
58. U2af2 ENSMUSG00000030435 107.08 1112.42 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
59. Pabpc1 ENSMUSG00000022283 101.95 1059.13 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
60. Rpl18a ENSMUSG00000045128 101.38 1053.21 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
61. Hbb-bh1 ENSMUSG00000052217 100.81 1047.29 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
62. Pcbp1 ENSMUSG00000051695 99.67 1035.44 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
63. Rps4x ENSMUSG00000031320 99.67 1035.44 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Atp5g3 ENSMUSG00000018770 98.53 1023.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
65. Wbp5 98.53 1023.60 WW domain binding protein 5
66. Banf1 ENSMUSG00000024844 97.96 1017.68 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
67. Hsp90aa1 ENSMUSG00000021270 97.96 1017.68 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
68. Lbh ENSMUSG00000024063 97.39 1011.76 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
69. Gpc3 ENSMUSG00000055653 95.68 993.99 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
70. Rplp1 ENSMUSG00000007892 93.98 976.33 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
71. Hba-a2 ENSMUSG00000069917 92.27 958.57 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
72. Ran ENSMUSG00000029430 91.70 952.64 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
73. Tsc22d1 ENSMUSG00000022010 91.70 952.64 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
74. Meg3 ENSMUSG00000021268 90.56 940.80 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
75. Ngfrap1 90.56 940.80 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
76. Trim28 ENSMUSG00000005566 90.56 940.80 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
77. Gm14303 ENSMUSG00000081344 88.85 923.04 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
78. Cdk4 ENSMUSG00000006728 84.86 881.59 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
79. Eef2 ENSMUSG00000034994 84.29 875.66 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
80. Hnrnpa2b1 ENSMUSG00000004980 84.29 875.66 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
81. Rpl37 ENSMUSG00000041841 83.72 869.74 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
82. Marcksl1 ENSMUSG00000047945 83.15 863.82 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
83. Marcks ENSMUSG00000069662 82.02 852.08 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
84. Ago2 ENSMUSG00000036698 81.45 846.16 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
85. Igfbp4 ENSMUSG00000017493 80.88 840.24 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
86. Sfrp1 ENSMUSG00000031548 80.88 840.24 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
87. Rpl39-ps ENSMUSG00000036305 80.31 834.32 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
88. Anp32b ENSMUSG00000028333 79.17 822.47 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
89. Cox8a ENSMUSG00000035885 78.60 816.55 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 78.60 816.55 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Hmgn1 ENSMUSG00000040681 78.03 810.63 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
92. Serbp1 ENSMUSG00000036371 78.03 810.63 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
93. Rpl8 ENSMUSG00000003970 76.89 798.79 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
94. Ywhae ENSMUSG00000020849 76.32 792.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
95. Ddx5 ENSMUSG00000020719 75.75 786.94 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
96. Gm14586 ENSMUSG00000083621 75.18 781.02 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
97. Rps5 ENSMUSG00000012848 75.18 781.02 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
98. Tmsb4x ENSMUSG00000049775 75.18 781.02 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
99. Rps3a1 ENSMUSG00000028081 74.61 775.10 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
100. H3f3b ENSMUSG00000016559 72.33 751.42 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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