Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_2, section s54.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3905.52 40574.13 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 2700.48 28055.07 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. Ptma ENSMUSG00000026238 2687.37 27918.87 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Atp6 ENSMUSG00000064357 2684.91 27893.31 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2587.43 26880.60 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2380.99 24735.91 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1524.93 15842.37 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 976.07 10140.31 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Co3 ENSMUSG00000064358 917.50 9531.83 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. mt-Nd3 ENSMUSG00000064360 895.79 9306.29 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Mdk ENSMUSG00000027239 658.22 6838.19 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Rnr2 ENSMUSG00000064339 654.13 6795.70 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. Hbb-y ENSMUSG00000052187 640.61 6655.25 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. Eef1a1 ENSMUSG00000037742 639.38 6642.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Actb ENSMUSG00000029580 587.77 6106.29 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Igf2 ENSMUSG00000048583 570.98 5931.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Nd2 ENSMUSG00000064345 564.02 5859.56 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. Gm13340 ENSMUSG00000083563 425.98 4425.47 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 304.74 3165.92 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. mt-Nd5 ENSMUSG00000064367 274.84 2855.29 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Hba-a1 ENSMUSG00000069919 269.52 2800.02 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Hba-x ENSMUSG00000055609 266.24 2765.95 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
23. Tuba1b ENSMUSG00000023004 250.26 2599.93 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Rpsa ENSMUSG00000032518 239.61 2489.29 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Cfl1 ENSMUSG00000056201 227.33 2361.71 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Npm1 ENSMUSG00000057113 222.00 2306.34 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Ubb ENSMUSG00000019505 220.77 2293.56 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Nedd4 ENSMUSG00000032216 214.63 2229.77 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Tubb5 ENSMUSG00000001525 201.52 2093.57 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Hsp90ab1 ENSMUSG00000023944 200.29 2080.80 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Tpt1 ENSMUSG00000060126 198.66 2063.86 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Pbx1 ENSMUSG00000052534 169.98 1765.91 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Fkbp1a ENSMUSG00000032966 167.94 1744.71 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
34. Peg3 ENSMUSG00000002265 163.43 1697.86 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
35. Hba-a2 ENSMUSG00000069917 162.20 1685.08 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
36. Rpl4 ENSMUSG00000032399 153.60 1595.74 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Pkm ENSMUSG00000032294 149.91 1557.40 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Hbb-bh1 ENSMUSG00000052217 145.82 1514.91 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
39. Eif4g2 ENSMUSG00000005610 144.18 1497.87 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Col3a1 ENSMUSG00000026043 138.85 1442.50 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
41. Rps26 ENSMUSG00000025362 138.44 1438.24 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
42. Rpl23 ENSMUSG00000071415 136.40 1417.05 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
43. Chchd2 ENSMUSG00000070493 135.58 1408.53 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Grb10 ENSMUSG00000020176 135.58 1408.53 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Gm10800 ENSMUSG00000075014 133.53 1387.23 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
46. Atp5g3 ENSMUSG00000018770 130.25 1353.16 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Eif5a ENSMUSG00000078812 128.20 1331.86 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Eef1b2 ENSMUSG00000025967 125.34 1302.15 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Col1a1 ENSMUSG00000001506 122.47 1272.33 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
50. Ywhab ENSMUSG00000018326 121.24 1259.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Hnrnpc ENSMUSG00000060373 120.42 1251.03 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Cdkn1c ENSMUSG00000037664 119.60 1242.51 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
53. Col1a2 ENSMUSG00000029661 118.78 1234.00 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
54. Rps20 ENSMUSG00000028234 117.15 1217.06 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Set ENSMUSG00000054766 114.28 1187.25 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
56. Ybx1 ENSMUSG00000028639 113.05 1174.47 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
57. Rps4x ENSMUSG00000031320 111.00 1153.17 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Tmsb4x ENSMUSG00000049775 110.18 1144.65 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
59. Rpl18a ENSMUSG00000045128 108.54 1127.61 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. Banf1 ENSMUSG00000024844 108.13 1123.35 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
61. Pabpc1 ENSMUSG00000022283 104.45 1085.12 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Ran ENSMUSG00000029430 104.45 1085.12 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
63. Pcbp1 ENSMUSG00000051695 102.81 1068.08 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
64. Trim28 ENSMUSG00000005566 102.81 1068.08 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. Gpc3 ENSMUSG00000055653 102.40 1063.83 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
66. Sfrp1 ENSMUSG00000031548 102.40 1063.83 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
67. Hsp90aa1 ENSMUSG00000021270 101.17 1051.05 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
68. Gm14303 ENSMUSG00000081344 100.35 1042.53 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
69. Myl6 ENSMUSG00000090841 99.94 1038.27 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
70. Tsc22d1 ENSMUSG00000022010 99.53 1034.01 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
71. Gm5805 ENSMUSG00000061848 99.12 1029.75 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
72. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.85 995.78 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
73. Hmgn1 ENSMUSG00000040681 92.98 965.96 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
74. Rps3a1 ENSMUSG00000028081 92.98 965.96 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Lbh ENSMUSG00000024063 92.57 961.70 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
76. Wbp5 92.57 961.70 WW domain binding protein 5
77. Rpl37 ENSMUSG00000041841 90.11 936.15 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
78. Hnrnpa2b1 ENSMUSG00000004980 89.70 931.89 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
79. U2af2 ENSMUSG00000030435 89.29 927.63 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
80. Paics ENSMUSG00000029247 88.88 923.37 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Meg3 ENSMUSG00000021268 88.06 914.85 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
82. Rplp1 ENSMUSG00000007892 88.06 914.85 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
83. Marcks ENSMUSG00000069662 86.83 902.07 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
84. Rps5 ENSMUSG00000012848 86.43 897.91 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
85. H3f3b ENSMUSG00000016559 86.02 893.65 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
86. Ywhae ENSMUSG00000020849 85.61 889.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
87. Ngfrap1 85.20 885.14 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
88. Sparc ENSMUSG00000018593 83.56 868.10 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
89. Anp32b ENSMUSG00000028333 83.15 863.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
90. Rpl8 ENSMUSG00000003970 82.33 855.32 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Cdk4 ENSMUSG00000006728 81.10 842.54 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
92. Gm8292 ENSMUSG00000100215 80.28 834.02 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
93. Gm5963 ENSMUSG00000052192 79.87 829.76 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
94. Gm14586 ENSMUSG00000083621 78.23 812.73 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
95. Kpnb1 ENSMUSG00000001440 77.00 799.95 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
96. Igfbp4 ENSMUSG00000017493 76.19 791.53 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
97. Ago2 ENSMUSG00000036698 75.37 783.01 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
98. Rrm2 ENSMUSG00000020649 74.96 778.75 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
99. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 74.55 774.49 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
100. Morf4l1 ENSMUSG00000062270 74.55 774.49 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA