Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s53.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3558.63 36971.15 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2433.74 25284.50 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2427.63 25221.02 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2377.61 24701.36 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2317.03 24071.98 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 2253.11 23407.91 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1365.54 14186.81 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1263.83 13130.12 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd3 ENSMUSG00000064360 905.91 9411.64 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Hbb-y ENSMUSG00000052187 879.79 9140.27 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. mt-Co3 ENSMUSG00000064358 810.32 8418.54 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. H19 ENSMUSG00000000031 778.64 8089.41 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Mdk ENSMUSG00000027239 678.60 7050.08 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Igf2 ENSMUSG00000048583 635.25 6599.71 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Actb ENSMUSG00000029580 569.11 5912.57 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. mt-Nd2 ENSMUSG00000064345 562.44 5843.28 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Eef1a1 ENSMUSG00000037742 561.89 5837.56 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Hba-a1 ENSMUSG00000069919 449.62 4671.17 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
19. Hmga2 ENSMUSG00000056758 429.06 4457.57 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Hba-x ENSMUSG00000055609 411.83 4278.57 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Gm13340 ENSMUSG00000083563 402.94 4186.21 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. mt-Nd5 ENSMUSG00000064367 327.35 3400.89 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Npm1 ENSMUSG00000057113 274.00 2846.63 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Cfl1 ENSMUSG00000056201 242.87 2523.21 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Rpsa ENSMUSG00000032518 239.54 2488.62 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Ubb ENSMUSG00000019505 233.43 2425.14 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Nedd4 ENSMUSG00000032216 230.09 2390.44 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Hbb-bh1 ENSMUSG00000052217 221.75 2303.79 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
29. Tuba1b ENSMUSG00000023004 221.20 2298.08 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Tpt1 ENSMUSG00000060126 215.09 2234.60 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Tubb5 ENSMUSG00000001525 206.75 2147.96 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. Hba-a2 ENSMUSG00000069917 197.30 2049.78 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
33. Pbx1 ENSMUSG00000052534 192.30 1997.83 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. Hsp90ab1 ENSMUSG00000023944 188.41 1957.42 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Set ENSMUSG00000054766 180.07 1870.77 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Peg3 ENSMUSG00000002265 176.18 1830.36 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
37. Rpl4 ENSMUSG00000032399 166.18 1726.47 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Atp5g3 ENSMUSG00000018770 160.62 1668.71 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Chchd2 ENSMUSG00000070493 159.51 1657.17 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Rps26 ENSMUSG00000025362 155.62 1616.76 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Pkm ENSMUSG00000032294 155.06 1610.94 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
42. Eif4g2 ENSMUSG00000005610 152.28 1582.06 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. Ybx1 ENSMUSG00000028639 150.62 1564.81 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Hnrnpc ENSMUSG00000060373 147.84 1535.93 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Cdkn1c ENSMUSG00000037664 146.17 1518.58 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
46. Eif5a ENSMUSG00000078812 142.28 1478.17 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Grb10 ENSMUSG00000020176 133.39 1385.81 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Col3a1 ENSMUSG00000026043 131.72 1368.46 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Fkbp1a ENSMUSG00000032966 131.16 1362.64 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
50. Ywhab ENSMUSG00000018326 126.16 1310.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Rps20 ENSMUSG00000028234 121.71 1264.46 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Pcbp1 ENSMUSG00000051695 118.38 1229.87 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
53. Gm10800 ENSMUSG00000075014 116.71 1212.52 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
54. Col1a1 ENSMUSG00000001506 113.38 1177.92 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
55. Ran ENSMUSG00000029430 112.27 1166.39 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
56. Eef1b2 ENSMUSG00000025967 111.16 1154.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Wbp5 110.60 1149.04 WW domain binding protein 5
58. Hsp90aa1 ENSMUSG00000021270 110.04 1143.22 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Rpl23 ENSMUSG00000071415 110.04 1143.22 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
60. Col1a2 ENSMUSG00000029661 109.49 1137.51 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
61. Rps4x ENSMUSG00000031320 108.93 1131.69 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Pabpc1 ENSMUSG00000022283 106.71 1108.63 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
63. Gm5805 ENSMUSG00000061848 105.60 1097.09 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
64. Sparc ENSMUSG00000018593 104.49 1085.56 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
65. Banf1 ENSMUSG00000024844 103.37 1073.93 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
66. Rpl18a ENSMUSG00000045128 101.71 1056.68 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
67. U2af2 ENSMUSG00000030435 99.48 1033.51 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
68. Rpl37 ENSMUSG00000041841 96.15 998.92 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
69. Tmsb4x ENSMUSG00000049775 93.93 975.85 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
70. Malat1 ENSMUSG00000092341 92.81 964.22 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
71. Marcks ENSMUSG00000069662 92.81 964.22 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
72. Myl6 ENSMUSG00000090841 91.70 952.69 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
73. Paics ENSMUSG00000029247 91.15 946.97 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
74. Lbh ENSMUSG00000024063 90.59 941.15 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
75. Ywhae ENSMUSG00000020849 88.37 918.09 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
76. Cdk4 ENSMUSG00000006728 87.81 912.27 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Gpc3 ENSMUSG00000055653 87.26 906.56 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
78. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 87.26 906.56 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
79. Hmgn1 ENSMUSG00000040681 86.70 900.74 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
80. mt-Rnr1 ENSMUSG00000064337 86.70 900.74 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
81. Eef2 ENSMUSG00000034994 86.15 895.03 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
82. Rps5 ENSMUSG00000012848 86.15 895.03 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
83. Ago2 ENSMUSG00000036698 85.59 889.21 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
84. Rplp1 ENSMUSG00000007892 85.03 883.39 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
85. Ngfrap1 83.92 871.86 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
86. Cox8a ENSMUSG00000035885 82.81 860.33 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
87. Fscn1 ENSMUSG00000029581 82.81 860.33 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
88. Trim28 ENSMUSG00000005566 82.81 860.33 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
89. Hnrnpa0 ENSMUSG00000007836 82.25 854.51 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
90. Morf4l1 ENSMUSG00000062270 81.70 848.79 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
91. Ddx39b ENSMUSG00000019432 81.14 842.98 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
92. Meg3 ENSMUSG00000021268 81.14 842.98 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
93. Anp32b ENSMUSG00000028333 79.48 825.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Rps3a1 ENSMUSG00000028081 79.48 825.73 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
95. Gas1 ENSMUSG00000052957 78.92 819.91 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
96. Gm14303 ENSMUSG00000081344 78.92 819.91 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
97. Gnai2 ENSMUSG00000032562 78.36 814.09 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
98. Hnrnpa2b1 ENSMUSG00000004980 78.36 814.09 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
99. Tecr ENSMUSG00000031708 77.81 808.38 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
100. Sub1 ENSMUSG00000022205 77.25 802.56 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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