Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s51.

Sample reads: 96,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3622.43 37641.11 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3050.50 31698.11 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2415.97 25104.64 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2313.56 24040.48 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2239.05 23266.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2205.03 22912.73 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1354.45 14074.25 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 899.91 9351.07 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. H19 ENSMUSG00000000031 881.54 9160.19 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co3 ENSMUSG00000064358 834.92 8675.75 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Actb ENSMUSG00000029580 700.87 7282.82 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Eef1a1 ENSMUSG00000037742 663.45 6893.99 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Igf2 ENSMUSG00000048583 621.26 6455.59 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 613.77 6377.76 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Hbb-y ENSMUSG00000052187 577.71 6003.05 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. mt-Rnr2 ENSMUSG00000064339 555.26 5769.77 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. mt-Nd2 ENSMUSG00000064345 518.17 5384.37 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. Hba-x ENSMUSG00000055609 373.57 3881.81 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
19. Gm13340 ENSMUSG00000083563 370.51 3850.01 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Hba-a1 ENSMUSG00000069919 291.58 3029.84 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
21. Hmga2 ENSMUSG00000056758 288.17 2994.41 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Tuba1b ENSMUSG00000023004 285.79 2969.68 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Cdkn1c ENSMUSG00000037664 274.23 2849.56 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
24. Npm1 ENSMUSG00000057113 272.52 2831.79 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tubb5 ENSMUSG00000001525 259.60 2697.53 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Tpt1 ENSMUSG00000060126 244.97 2545.51 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. mt-Nd5 ENSMUSG00000064367 227.61 2365.12 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Cfl1 ENSMUSG00000056201 227.27 2361.59 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Ubb ENSMUSG00000019505 225.57 2343.93 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Nedd4 ENSMUSG00000032216 222.51 2312.13 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Rpsa ENSMUSG00000032518 216.39 2248.53 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
32. Hsp90ab1 ENSMUSG00000023944 200.06 2078.85 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Chchd2 ENSMUSG00000070493 179.98 1870.19 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Pkm ENSMUSG00000032294 179.64 1866.66 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Fkbp1a ENSMUSG00000032966 169.43 1760.57 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
36. Rpl4 ENSMUSG00000032399 168.75 1753.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Eif4g2 ENSMUSG00000005610 165.69 1721.70 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Ybx1 ENSMUSG00000028639 160.25 1665.18 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
39. Pbx1 ENSMUSG00000052534 146.64 1523.75 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
40. Rps26 ENSMUSG00000025362 145.96 1516.69 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Hba-a2 ENSMUSG00000069917 144.94 1506.09 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
42. Grb10 ENSMUSG00000020176 142.90 1484.89 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Atp5g3 ENSMUSG00000018770 140.86 1463.69 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Eif5a ENSMUSG00000078812 139.15 1445.92 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Rpl23 ENSMUSG00000071415 135.07 1403.53 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Rps20 ENSMUSG00000028234 135.07 1403.53 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Tmsb4x ENSMUSG00000049775 133.71 1389.40 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
48. Set ENSMUSG00000054766 133.03 1382.33 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
49. Ywhab ENSMUSG00000018326 133.03 1382.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Col3a1 ENSMUSG00000026043 132.35 1375.26 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
51. Eef1b2 ENSMUSG00000025967 130.31 1354.07 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Hbb-bh1 ENSMUSG00000052217 129.63 1347.00 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
53. Ran ENSMUSG00000029430 123.16 1279.77 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Peg3 ENSMUSG00000002265 119.08 1237.37 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
55. Pcbp1 ENSMUSG00000051695 117.04 1216.18 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
56. Rps4x ENSMUSG00000031320 116.70 1212.64 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Hnrnpc ENSMUSG00000060373 113.64 1180.85 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
58. Hsp90aa1 ENSMUSG00000021270 112.62 1170.25 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Col1a1 ENSMUSG00000001506 109.21 1134.81 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
60. Gm14303 ENSMUSG00000081344 109.21 1134.81 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Myl6 ENSMUSG00000090841 105.81 1099.48 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
62. Hmgn1 ENSMUSG00000040681 105.47 1095.95 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Rps3a1 ENSMUSG00000028081 105.47 1095.95 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
64. U2af2 ENSMUSG00000030435 103.77 1078.29 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Gm5805 ENSMUSG00000061848 102.75 1067.69 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
66. Rpl37 ENSMUSG00000041841 102.07 1060.62 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
67. Gm10800 ENSMUSG00000075014 101.73 1057.09 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
68. Anp32b ENSMUSG00000028333 101.39 1053.56 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
69. Pabpc1 ENSMUSG00000022283 101.05 1050.02 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Banf1 ENSMUSG00000024844 99.01 1028.82 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
71. Trim28 ENSMUSG00000005566 97.99 1018.23 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
72. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 97.65 1014.69 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
73. Ywhae ENSMUSG00000020849 97.65 1014.69 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Cox8a ENSMUSG00000035885 96.29 1000.56 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
75. Cdk4 ENSMUSG00000006728 95.26 989.86 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
76. Meg3 ENSMUSG00000021268 95.26 989.86 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Rps5 ENSMUSG00000012848 93.56 972.19 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
78. Col1a2 ENSMUSG00000029661 92.20 958.06 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
79. Marcksl1 ENSMUSG00000047945 91.52 951.00 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
80. Paics ENSMUSG00000029247 91.52 951.00 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Ngfrap1 90.84 943.93 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
82. Ago2 ENSMUSG00000036698 90.50 940.40 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
83. Rplp1 ENSMUSG00000007892 89.48 929.80 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
84. Rpl18a ENSMUSG00000045128 88.80 922.73 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
85. Marcks ENSMUSG00000069662 87.78 912.13 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
86. Hnrnpa0 ENSMUSG00000007836 87.10 905.07 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
87. Rpl8 ENSMUSG00000003970 85.40 887.40 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
88. Wbp5 85.40 887.40 WW domain binding protein 5
89. Tpm4 ENSMUSG00000031799 84.04 873.27 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
90. Hnrnpa2b1 ENSMUSG00000004980 83.70 869.74 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
91. Sparc ENSMUSG00000018593 81.66 848.54 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
92. Ddx5 ENSMUSG00000020719 81.31 844.90 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
93. Rpl32 ENSMUSG00000057841 80.97 841.37 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
94. Ssbp3 ENSMUSG00000061887 79.27 823.70 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
95. Morf4l1 ENSMUSG00000062270 78.93 820.17 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
96. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 78.25 813.11 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
97. Lamp1 ENSMUSG00000031447 78.25 813.11 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
98. Rps9 ENSMUSG00000006333 77.91 809.57 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
99. Eef2 ENSMUSG00000034994 76.89 798.97 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Fscn1 ENSMUSG00000029581 76.89 798.97 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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