Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s50.

Sample reads: 96,229. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3590.10 37308.13 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2870.70 29832.16 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2517.65 26163.28 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2388.25 24818.57 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2341.93 24337.21 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2288.15 23778.33 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1433.49 14896.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 930.81 9672.93 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd3 ENSMUSG00000064360 854.13 8876.07 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 828.57 8610.46 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Actb ENSMUSG00000029580 718.87 7470.46 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 709.29 7370.90 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Eef1a1 ENSMUSG00000037742 623.56 6480.00 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Mdk ENSMUSG00000027239 618.76 6430.12 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Igf2 ENSMUSG00000048583 595.33 6186.64 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. mt-Nd2 ENSMUSG00000064345 487.24 5063.37 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Gm13340 ENSMUSG00000083563 387.66 4028.54 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Cdkn1c ENSMUSG00000037664 342.40 3558.20 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
19. Hbb-y ENSMUSG00000052187 328.02 3408.77 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Npm1 ENSMUSG00000057113 307.78 3198.43 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Tuba1b ENSMUSG00000023004 279.03 2899.66 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Tubb5 ENSMUSG00000001525 256.13 2661.69 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Nedd4 ENSMUSG00000032216 247.08 2567.64 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. mt-Nd5 ENSMUSG00000064367 233.77 2429.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
25. Rpsa ENSMUSG00000032518 231.10 2401.58 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Tpt1 ENSMUSG00000060126 221.52 2302.02 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Cfl1 ENSMUSG00000056201 220.99 2296.52 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Ubb ENSMUSG00000019505 215.13 2235.62 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Hmga2 ENSMUSG00000056758 212.47 2207.98 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Hsp90ab1 ENSMUSG00000023944 201.28 2091.69 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Pkm ENSMUSG00000032294 195.96 2036.41 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Ybx1 ENSMUSG00000028639 175.19 1820.57 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
33. Chchd2 ENSMUSG00000070493 172.53 1792.92 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Eif4g2 ENSMUSG00000005610 170.93 1776.30 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Rpl4 ENSMUSG00000032399 169.33 1759.67 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Atp5g3 ENSMUSG00000018770 162.41 1687.76 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Fkbp1a ENSMUSG00000032966 162.41 1687.76 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
38. Peg3 ENSMUSG00000002265 158.68 1648.99 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
39. Pbx1 ENSMUSG00000052534 152.83 1588.20 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
40. Eif5a ENSMUSG00000078812 151.23 1571.57 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Grb10 ENSMUSG00000020176 150.70 1566.07 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Eef1b2 ENSMUSG00000025967 145.90 1516.19 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Hba-x ENSMUSG00000055609 144.31 1499.66 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
44. Hnrnpc ENSMUSG00000060373 143.77 1494.05 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Ran ENSMUSG00000029430 143.77 1494.05 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
46. Hba-a1 ENSMUSG00000069919 141.64 1471.92 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
47. Pcbp1 ENSMUSG00000051695 137.38 1427.65 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
48. Rps20 ENSMUSG00000028234 136.85 1422.14 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Rps4x ENSMUSG00000031320 136.32 1416.63 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
50. Set ENSMUSG00000054766 130.99 1361.24 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
51. Col3a1 ENSMUSG00000026043 126.73 1316.97 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
52. Banf1 ENSMUSG00000024844 125.14 1300.45 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
53. Ywhab ENSMUSG00000018326 124.07 1289.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Hsp90aa1 ENSMUSG00000021270 123.54 1283.82 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Rpl23 ENSMUSG00000071415 123.54 1283.82 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
56. Hmgn1 ENSMUSG00000040681 121.41 1261.69 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
57. Paics ENSMUSG00000029247 120.34 1250.57 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
58. Rps3a1 ENSMUSG00000028081 116.62 1211.91 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
59. Pabpc1 ENSMUSG00000022283 116.08 1206.30 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
60. Rps26 ENSMUSG00000025362 115.02 1195.28 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
61. Myl6 ENSMUSG00000090841 113.95 1184.16 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
62. Tmsb4x ENSMUSG00000049775 112.36 1167.64 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
63. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 111.82 1162.03 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
64. Trim28 ENSMUSG00000005566 109.69 1139.89 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. U2af2 ENSMUSG00000030435 109.69 1139.89 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
66. Rps5 ENSMUSG00000012848 102.77 1067.98 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Rpl18a ENSMUSG00000045128 102.24 1062.47 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Col1a1 ENSMUSG00000001506 98.51 1023.71 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
69. Gm14303 ENSMUSG00000081344 97.98 1018.20 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
70. Gm5805 ENSMUSG00000061848 97.98 1018.20 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
71. Rrm2 ENSMUSG00000020649 97.45 1012.70 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
72. Meg3 ENSMUSG00000021268 95.85 996.07 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
73. Ngfrap1 95.85 996.07 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
74. Hnrnpa0 ENSMUSG00000007836 95.32 990.56 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
75. Wbp5 94.78 984.95 WW domain binding protein 5
76. Rplp1 ENSMUSG00000007892 91.59 951.80 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
77. Ago2 ENSMUSG00000036698 90.52 940.68 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
78. Anp32b ENSMUSG00000028333 88.93 924.16 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Ddx5 ENSMUSG00000020719 87.86 913.04 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
80. Hnrnph1 ENSMUSG00000007850 86.80 902.02 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
81. Marcksl1 ENSMUSG00000047945 86.80 902.02 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
82. Ywhae ENSMUSG00000020849 86.26 896.41 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
83. Rpl26 ENSMUSG00000060938 85.73 890.90 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
84. Col1a2 ENSMUSG00000029661 84.67 879.89 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
85. Lamp1 ENSMUSG00000031447 84.67 879.89 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
86. Fscn1 ENSMUSG00000029581 83.60 868.77 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
87. H3f3b ENSMUSG00000016559 83.60 868.77 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
88. Marcks ENSMUSG00000069662 82.00 852.14 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Rpl8 ENSMUSG00000003970 82.00 852.14 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
90. Sub1 ENSMUSG00000022205 82.00 852.14 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
91. Tpm4 ENSMUSG00000031799 82.00 852.14 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
92. Hnrnpa2b1 ENSMUSG00000004980 79.87 830.00 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
93. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 77.74 807.87 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
94. Cox8a ENSMUSG00000035885 77.21 802.36 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
95. Rps9 ENSMUSG00000006333 77.21 802.36 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
96. Morf4l2 ENSMUSG00000031422 76.15 791.35 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
97. Ddx39b ENSMUSG00000019432 75.61 785.74 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
98. Fkbp4 ENSMUSG00000030357 75.61 785.74 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
99. Gpc3 ENSMUSG00000055653 75.61 785.74 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
100. Hbb-bh1 ENSMUSG00000052217 75.61 785.74 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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