Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s49.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3513.42 36501.65 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2536.53 26352.53 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2450.26 25456.26 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2393.59 24867.50 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2318.32 24085.51 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2188.06 22732.21 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1358.34 14112.08 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1113.91 11572.64 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd3 ENSMUSG00000064360 819.57 8514.68 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 757.83 7873.25 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co3 ENSMUSG00000064358 704.54 7319.61 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Igf2 ENSMUSG00000048583 658.03 6836.41 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Actb ENSMUSG00000029580 651.26 6766.07 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 616.58 6405.78 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 587.83 6107.09 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd2 ENSMUSG00000064345 541.31 5623.78 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Gm13340 ENSMUSG00000083563 373.84 3883.90 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hbb-y ENSMUSG00000052187 352.70 3664.27 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Hmga2 ENSMUSG00000056758 322.25 3347.92 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Cdkn1c ENSMUSG00000037664 316.33 3286.42 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
21. Npm1 ENSMUSG00000057113 285.03 2961.24 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 282.49 2934.85 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Gm10800 ENSMUSG00000075014 261.35 2715.22 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
24. Rpsa ENSMUSG00000032518 253.74 2636.16 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Tubb5 ENSMUSG00000001525 253.74 2636.16 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Cfl1 ENSMUSG00000056201 252.89 2627.33 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. mt-Nd5 ENSMUSG00000064367 241.90 2513.15 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Hba-x ENSMUSG00000055609 220.75 2293.42 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Tpt1 ENSMUSG00000060126 214.83 2231.91 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Ubb ENSMUSG00000019505 214.83 2231.91 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Hsp90ab1 ENSMUSG00000023944 209.76 2179.24 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Hba-a1 ENSMUSG00000069919 194.53 2021.01 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
33. Nedd4 ENSMUSG00000032216 191.15 1985.90 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Ybx1 ENSMUSG00000028639 189.46 1968.34 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Pkm ENSMUSG00000032294 187.77 1950.78 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Eif4g2 ENSMUSG00000005610 184.38 1915.56 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Chchd2 ENSMUSG00000070493 172.54 1792.55 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Pbx1 ENSMUSG00000052534 172.54 1792.55 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
39. Eif5a ENSMUSG00000078812 170.85 1775.00 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Peg3 ENSMUSG00000002265 162.39 1687.10 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
41. Fkbp1a ENSMUSG00000032966 159.85 1660.71 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
42. Atp5g3 ENSMUSG00000018770 148.86 1546.54 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Rpl4 ENSMUSG00000032399 143.78 1493.76 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
44. Eef1b2 ENSMUSG00000025967 142.94 1485.03 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Rps26 ENSMUSG00000025362 142.09 1476.20 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Hnrnpc ENSMUSG00000060373 139.56 1449.92 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Grb10 ENSMUSG00000020176 137.86 1432.26 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Col3a1 ENSMUSG00000026043 136.17 1414.70 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Ywhab ENSMUSG00000018326 136.17 1414.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Ran ENSMUSG00000029430 131.10 1362.02 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. Hsp90aa1 ENSMUSG00000021270 127.71 1326.81 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Pcbp1 ENSMUSG00000051695 126.02 1309.25 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
53. Set ENSMUSG00000054766 123.49 1282.96 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
54. Malat1 ENSMUSG00000092341 117.57 1221.46 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
55. Rpl23 ENSMUSG00000071415 117.57 1221.46 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
56. Tmsb4x ENSMUSG00000049775 111.64 1159.85 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
57. Rps4x ENSMUSG00000031320 110.80 1151.12 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Banf1 ENSMUSG00000024844 109.95 1142.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
59. U2af2 ENSMUSG00000030435 109.95 1142.29 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
60. Pabpc1 ENSMUSG00000022283 109.11 1133.57 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
61. Ywhae ENSMUSG00000020849 109.11 1133.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
62. Hba-a2 ENSMUSG00000069917 108.26 1124.74 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
63. Hbb-bh1 ENSMUSG00000052217 106.57 1107.18 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
64. Rps5 ENSMUSG00000012848 104.03 1080.79 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Meg3 ENSMUSG00000021268 99.80 1036.84 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
66. Paics ENSMUSG00000029247 95.57 992.90 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Gm5805 ENSMUSG00000061848 94.73 984.17 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Rps3a1 ENSMUSG00000028081 94.73 984.17 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 94.73 984.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Col1a1 ENSMUSG00000001506 93.88 975.34 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
71. Rpl8 ENSMUSG00000003970 93.88 975.34 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
72. Ago2 ENSMUSG00000036698 93.04 966.61 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
73. Hmgn1 ENSMUSG00000040681 93.04 966.61 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
74. Rps20 ENSMUSG00000028234 92.19 957.78 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
75. Rps9 ENSMUSG00000006333 92.19 957.78 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
76. Wbp5 91.35 949.05 WW domain binding protein 5
77. Marcks ENSMUSG00000069662 90.50 940.22 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Ddx5 ENSMUSG00000020719 89.65 931.39 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Rpl18a ENSMUSG00000045128 89.65 931.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
80. Trim28 ENSMUSG00000005566 89.65 931.39 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Myl6 ENSMUSG00000090841 87.96 913.83 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
82. Cox8a ENSMUSG00000035885 87.12 905.11 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
83. Acta2 ENSMUSG00000035783 83.73 869.89 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
84. Anp32b ENSMUSG00000028333 82.89 861.16 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
85. Lamp1 ENSMUSG00000031447 82.04 852.33 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
86. Tpm1 ENSMUSG00000032366 82.04 852.33 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
87. Ngfrap1 81.20 843.60 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
88. Rplp1 ENSMUSG00000007892 81.20 843.60 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
89. Cdc42 ENSMUSG00000006699 80.35 834.77 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
90. Fscn1 ENSMUSG00000029581 77.81 808.38 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
91. Eef2 ENSMUSG00000034994 76.97 799.66 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
92. Sparc ENSMUSG00000018593 76.97 799.66 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
93. Gpc3 ENSMUSG00000055653 76.12 790.83 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
94. Hspe1 ENSMUSG00000073676 76.12 790.83 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
95. Gm5963 ENSMUSG00000052192 75.28 782.10 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
96. Sub1 ENSMUSG00000022205 75.28 782.10 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
97. Cdk4 ENSMUSG00000006728 74.43 773.27 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
98. Gm14303 ENSMUSG00000081344 74.43 773.27 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Ssbp3 ENSMUSG00000061887 74.43 773.27 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
100. Hnrnpk ENSMUSG00000021546 73.58 764.44 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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