Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s48.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3365.00 34962.30 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2666.20 27701.78 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2490.79 25879.27 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2487.92 25849.45 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2270.66 23592.13 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2190.97 22764.15 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1384.41 14384.00 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 926.38 9625.08 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Rnr2 ENSMUSG00000064339 805.42 8368.30 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Co3 ENSMUSG00000064358 767.01 7969.22 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Nd3 ENSMUSG00000064360 759.56 7891.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Igf2 ENSMUSG00000048583 706.25 7337.93 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Actb ENSMUSG00000029580 638.60 6635.05 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 630.01 6545.80 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 591.60 6146.72 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd2 ENSMUSG00000064345 484.97 5038.83 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hmga2 ENSMUSG00000056758 373.19 3877.44 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Gm13340 ENSMUSG00000083563 358.86 3728.55 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Npm1 ENSMUSG00000057113 271.72 2823.17 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Hbb-y ENSMUSG00000052187 261.40 2715.94 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. mt-Nd5 ENSMUSG00000064367 257.39 2674.28 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Ubb ENSMUSG00000019505 252.80 2626.59 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Tuba1b ENSMUSG00000023004 248.79 2584.92 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Hsp90ab1 ENSMUSG00000023944 242.49 2519.47 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
25. Nedd4 ENSMUSG00000032216 236.18 2453.91 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Rpsa ENSMUSG00000032518 231.02 2400.29 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Cfl1 ENSMUSG00000056201 229.30 2382.42 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Pbx1 ENSMUSG00000052534 219.56 2281.23 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
29. Tpt1 ENSMUSG00000060126 212.68 2209.74 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Tubb5 ENSMUSG00000001525 209.24 2174.00 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Cdkn1c ENSMUSG00000037664 202.36 2102.52 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
32. Col3a1 ENSMUSG00000026043 169.11 1757.05 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
33. Eif4g2 ENSMUSG00000005610 167.96 1745.10 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Peg3 ENSMUSG00000002265 167.39 1739.18 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
35. Hnrnpc ENSMUSG00000060373 166.82 1733.26 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Set ENSMUSG00000054766 162.23 1685.57 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
37. Grb10 ENSMUSG00000020176 161.66 1679.65 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Rpl4 ENSMUSG00000032399 157.64 1637.88 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Chchd2 ENSMUSG00000070493 152.49 1584.37 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Acta2 ENSMUSG00000035783 151.91 1578.34 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
41. Fkbp1a ENSMUSG00000032966 151.34 1572.42 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
42. Ybx1 ENSMUSG00000028639 145.03 1506.86 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Atp5g3 ENSMUSG00000018770 141.59 1471.12 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Hba-x ENSMUSG00000055609 141.02 1465.20 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
45. Eef1b2 ENSMUSG00000025967 138.15 1435.38 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Pkm ENSMUSG00000032294 137.58 1429.45 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
47. Eif5a ENSMUSG00000078812 131.85 1369.92 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Rps26 ENSMUSG00000025362 128.41 1334.18 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Ywhab ENSMUSG00000018326 128.41 1334.18 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Rps4x ENSMUSG00000031320 127.26 1322.23 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Hsp90aa1 ENSMUSG00000021270 125.54 1304.36 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Ran ENSMUSG00000029430 123.82 1286.49 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Banf1 ENSMUSG00000024844 122.10 1268.62 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Hba-a1 ENSMUSG00000069919 122.10 1268.62 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
55. Rpl23 ENSMUSG00000071415 122.10 1268.62 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
56. Trim28 ENSMUSG00000005566 120.96 1256.77 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
57. Pcbp1 ENSMUSG00000051695 116.37 1209.08 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
58. Pabpc1 ENSMUSG00000022283 111.21 1155.47 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Col1a1 ENSMUSG00000001506 107.77 1119.73 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
60. Ago2 ENSMUSG00000036698 107.20 1113.81 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
61. Rps20 ENSMUSG00000028234 106.63 1107.88 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
62. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 106.05 1101.86 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
63. Tmsb4x ENSMUSG00000049775 103.76 1078.06 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
64. Myl6 ENSMUSG00000090841 103.19 1072.14 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
65. Meg3 ENSMUSG00000021268 102.61 1066.12 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
66. Rpl18a ENSMUSG00000045128 102.61 1066.12 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
67. Hmgn1 ENSMUSG00000040681 99.75 1036.40 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
68. Gm5805 ENSMUSG00000061848 99.17 1030.37 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
69. Gm10800 ENSMUSG00000075014 96.88 1006.58 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
70. Wbp5 94.59 982.79 WW domain binding protein 5
71. Paics ENSMUSG00000029247 94.01 976.76 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
72. Ywhae ENSMUSG00000020849 94.01 976.76 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
73. Actc1 ENSMUSG00000068614 92.87 964.92 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
74. Rps3a1 ENSMUSG00000028081 90.57 941.02 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 90.00 935.10 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
76. Cdk4 ENSMUSG00000006728 88.85 923.15 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. U2af2 ENSMUSG00000030435 88.85 923.15 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
78. Tpm1 ENSMUSG00000032366 87.71 911.31 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
79. Anp32b ENSMUSG00000028333 87.13 905.28 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
80. Marcks ENSMUSG00000069662 87.13 905.28 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
81. Rps5 ENSMUSG00000012848 85.99 893.43 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. Gm14303 ENSMUSG00000081344 84.84 881.49 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
83. Col1a2 ENSMUSG00000029661 84.27 875.56 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
84. Hnrnph1 ENSMUSG00000007850 84.27 875.56 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
85. Marcksl1 ENSMUSG00000047945 84.27 875.56 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
86. Rpl37 ENSMUSG00000041841 84.27 875.56 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
87. Ddx5 ENSMUSG00000020719 83.69 869.54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
88. Rrm2 ENSMUSG00000020649 83.69 869.54 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
89. Gm8292 ENSMUSG00000100215 81.40 845.74 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
90. Basp1 ENSMUSG00000045763 80.83 839.82 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
91. Hnrnpa2b1 ENSMUSG00000004980 80.83 839.82 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Malat1 ENSMUSG00000092341 80.83 839.82 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
93. Ngfrap1 80.83 839.82 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
94. Rpl8 ENSMUSG00000003970 80.26 833.90 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
95. Sparc ENSMUSG00000018593 80.26 833.90 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
96. Oaz1 ENSMUSG00000035242 79.68 827.87 ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433]
97. Rplp1 ENSMUSG00000007892 78.54 816.03 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
98. Morf4l1 ENSMUSG00000062270 77.96 810.00 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
99. Ssbp3 ENSMUSG00000061887 77.96 810.00 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
100. H2afy ENSMUSG00000015937 77.39 804.08 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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