Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s46.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3220.84 33467.36 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2888.78 30016.96 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2477.85 25747.04 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2321.58 24123.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2320.86 24115.78 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2318.69 24093.23 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1384.70 14388.25 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1003.44 10426.62 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Rnr2 ENSMUSG00000064339 863.81 8975.75 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Nd3 ENSMUSG00000064360 709.71 7374.51 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Mdk ENSMUSG00000027239 695.97 7231.74 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. Igf2 ENSMUSG00000048583 669.20 6953.58 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Actb ENSMUSG00000029580 651.84 6773.19 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 627.24 6517.57 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Eef1a1 ENSMUSG00000037742 608.43 6322.12 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Nd2 ENSMUSG00000064345 493.40 5126.86 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hbb-y ENSMUSG00000052187 491.95 5111.79 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Hmga2 ENSMUSG00000056758 407.31 4232.31 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Gm13340 ENSMUSG00000083563 361.01 3751.21 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Npm1 ENSMUSG00000057113 293.72 3052.01 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. mt-Nd5 ENSMUSG00000064367 253.93 2638.56 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Hba-a1 ENSMUSG00000069919 252.49 2623.59 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Hba-x ENSMUSG00000055609 250.32 2601.04 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. Tuba1b ENSMUSG00000023004 241.64 2510.85 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Pbx1 ENSMUSG00000052534 231.51 2405.59 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
26. Nedd4 ENSMUSG00000032216 230.06 2390.53 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Ubb ENSMUSG00000019505 230.06 2390.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Cfl1 ENSMUSG00000056201 225.00 2337.95 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Tpt1 ENSMUSG00000060126 215.59 2240.17 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Hsp90ab1 ENSMUSG00000023944 214.87 2232.69 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Rpsa ENSMUSG00000032518 209.80 2180.01 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
32. Set ENSMUSG00000054766 205.46 2134.91 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Eif4g2 ENSMUSG00000005610 198.95 2067.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Tubb5 ENSMUSG00000001525 186.65 1939.46 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Cdkn1c ENSMUSG00000037664 178.69 1856.75 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Peg3 ENSMUSG00000002265 162.78 1691.43 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
37. Ybx1 ENSMUSG00000028639 159.16 1653.81 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
38. Col3a1 ENSMUSG00000026043 156.27 1623.78 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
39. Hnrnpc ENSMUSG00000060373 155.54 1616.20 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Fkbp1a ENSMUSG00000032966 149.03 1548.55 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
41. Hsp90aa1 ENSMUSG00000021270 149.03 1548.55 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Pkm ENSMUSG00000032294 146.14 1518.52 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
43. Hbb-bh1 ENSMUSG00000052217 142.52 1480.91 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
44. Grb10 ENSMUSG00000020176 138.90 1443.29 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Rpl4 ENSMUSG00000032399 138.90 1443.29 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
46. Chchd2 ENSMUSG00000070493 136.73 1420.74 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Acta2 ENSMUSG00000035783 132.39 1375.65 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
48. Atp5g3 ENSMUSG00000018770 130.95 1360.69 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Rps26 ENSMUSG00000025362 130.22 1353.10 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Eef1b2 ENSMUSG00000025967 128.78 1338.14 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Ran ENSMUSG00000029430 127.33 1323.07 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
52. Eif5a ENSMUSG00000078812 125.88 1308.00 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Banf1 ENSMUSG00000024844 125.16 1300.52 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Hba-a2 ENSMUSG00000069917 123.71 1285.46 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
55. Hmgn1 ENSMUSG00000040681 122.26 1270.39 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
56. Ywhab ENSMUSG00000018326 121.54 1262.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Malat1 ENSMUSG00000092341 119.37 1240.36 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
58. Pcbp1 ENSMUSG00000051695 115.75 1202.74 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Wbp5 113.58 1180.20 WW domain binding protein 5
60. Paics ENSMUSG00000029247 111.41 1157.65 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Rpl23 ENSMUSG00000071415 110.69 1150.17 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
62. Ago2 ENSMUSG00000036698 109.24 1135.10 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
63. Gm10800 ENSMUSG00000075014 109.24 1135.10 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
64. Rps4x ENSMUSG00000031320 105.63 1097.59 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 105.63 1097.59 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
66. Tmsb4x ENSMUSG00000049775 105.63 1097.59 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
67. Actc1 ENSMUSG00000068614 104.18 1082.52 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
68. Myl6 ENSMUSG00000090841 104.18 1082.52 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
69. Rps20 ENSMUSG00000028234 104.18 1082.52 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
70. Trim28 ENSMUSG00000005566 103.45 1074.94 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Pabpc1 ENSMUSG00000022283 102.73 1067.45 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
72. Marcks ENSMUSG00000069662 100.56 1044.91 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
73. Gm14303 ENSMUSG00000081344 99.11 1029.84 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
74. Rps3a1 ENSMUSG00000028081 98.39 1022.36 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Gm5805 ENSMUSG00000061848 97.67 1014.88 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Ngfrap1 96.22 999.81 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
77. Rrm2 ENSMUSG00000020649 96.22 999.81 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
78. Col1a1 ENSMUSG00000001506 94.05 977.26 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
79. Rps5 ENSMUSG00000012848 93.33 969.78 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Hnrnph1 ENSMUSG00000007850 89.71 932.17 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
81. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 89.71 932.17 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
82. Ddx5 ENSMUSG00000020719 88.99 924.68 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
83. Morf4l1 ENSMUSG00000062270 88.99 924.68 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
84. Rps9 ENSMUSG00000006333 88.26 917.10 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
85. Marcksl1 ENSMUSG00000047945 86.82 902.14 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
86. Sub1 ENSMUSG00000022205 86.09 894.55 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
87. Anp32b ENSMUSG00000028333 83.92 872.00 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
88. Meg3 ENSMUSG00000021268 83.92 872.00 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
89. Hnrnpa2b1 ENSMUSG00000004980 82.47 856.94 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
90. Ywhae ENSMUSG00000020849 82.47 856.94 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
91. Ddx39b ENSMUSG00000019432 81.75 849.45 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
92. Rpl8 ENSMUSG00000003970 81.75 849.45 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Gpc3 ENSMUSG00000055653 80.30 834.39 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
94. Gm15459 ENSMUSG00000100801 79.58 826.91 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
95. Cdk4 ENSMUSG00000006728 77.41 804.36 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
96. Kpnb1 ENSMUSG00000001440 77.41 804.36 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
97. Col1a2 ENSMUSG00000029661 76.69 796.88 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
98. Hnrnpa0 ENSMUSG00000007836 76.69 796.88 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
99. U2af2 ENSMUSG00000030435 76.69 796.88 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
100. H3f3b ENSMUSG00000016559 75.96 789.29 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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