Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s45.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3637.12 37788.57 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2731.85 28383.09 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2441.55 25366.96 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2305.27 23951.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2294.39 23838.01 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 2259.46 23475.10 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1343.88 13962.50 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1007.19 10464.40 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 831.98 8644.02 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 820.53 8525.06 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 770.71 8007.44 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Mdk ENSMUSG00000027239 758.12 7876.64 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Rnr2 ENSMUSG00000064339 665.36 6912.89 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Igf2 ENSMUSG00000048583 656.77 6823.64 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 617.26 6413.14 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Hbb-y ENSMUSG00000052187 559.43 5812.31 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. mt-Nd2 ENSMUSG00000064345 523.35 5437.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. Gm13340 ENSMUSG00000083563 401.96 4176.24 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hba-x ENSMUSG00000055609 291.45 3028.08 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Tuba1b ENSMUSG00000023004 283.43 2944.75 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Hba-a1 ENSMUSG00000069919 282.29 2932.91 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Npm1 ENSMUSG00000057113 282.29 2932.91 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Cfl1 ENSMUSG00000056201 254.80 2647.29 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Tpt1 ENSMUSG00000060126 246.79 2564.07 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
25. Tubb5 ENSMUSG00000001525 242.21 2516.49 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Hmga2 ENSMUSG00000056758 241.64 2510.57 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
27. mt-Nd5 ENSMUSG00000064367 233.62 2427.24 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Cdkn1c ENSMUSG00000037664 230.18 2391.50 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
29. Ubb ENSMUSG00000019505 230.18 2391.50 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Rpsa ENSMUSG00000032518 219.30 2278.46 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Nedd4 ENSMUSG00000032216 217.01 2254.67 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Hsp90ab1 ENSMUSG00000023944 199.26 2070.25 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Pkm ENSMUSG00000032294 194.68 2022.67 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Pbx1 ENSMUSG00000052534 182.66 1897.78 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
35. Rpl4 ENSMUSG00000032399 181.51 1885.83 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Atp5g3 ENSMUSG00000018770 162.62 1689.57 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Col3a1 ENSMUSG00000026043 162.04 1683.55 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
38. Chchd2 ENSMUSG00000070493 160.90 1671.70 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Eif4g2 ENSMUSG00000005610 159.18 1653.83 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Eif5a ENSMUSG00000078812 155.75 1618.19 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Hbb-bh1 ENSMUSG00000052217 151.74 1576.53 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
42. Myl6 ENSMUSG00000090841 150.59 1564.58 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
43. Ybx1 ENSMUSG00000028639 150.59 1564.58 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Acta2 ENSMUSG00000035783 149.45 1552.74 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
45. Hnrnpc ENSMUSG00000060373 148.30 1540.79 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
46. Grb10 ENSMUSG00000020176 139.71 1451.54 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
47. Peg3 ENSMUSG00000002265 139.71 1451.54 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
48. Fkbp1a ENSMUSG00000032966 138.00 1433.78 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Rps20 ENSMUSG00000028234 137.42 1427.75 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Hba-a2 ENSMUSG00000069917 131.70 1368.32 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
51. Eef1b2 ENSMUSG00000025967 128.83 1338.50 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Ran ENSMUSG00000029430 128.26 1332.58 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Hmgn1 ENSMUSG00000040681 125.40 1302.87 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
54. Hsp90aa1 ENSMUSG00000021270 124.25 1290.92 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Banf1 ENSMUSG00000024844 123.68 1285.00 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. Pcbp1 ENSMUSG00000051695 123.11 1279.08 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
57. Tmsb4x ENSMUSG00000049775 121.39 1261.21 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
58. U2af2 ENSMUSG00000030435 119.10 1237.41 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
59. Rpl23 ENSMUSG00000071415 115.66 1201.67 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
60. Rps26 ENSMUSG00000025362 115.66 1201.67 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
61. Trim28 ENSMUSG00000005566 115.66 1201.67 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. Ywhab ENSMUSG00000018326 110.51 1148.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Set ENSMUSG00000054766 107.65 1118.45 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
64. Gm5805 ENSMUSG00000061848 107.08 1112.53 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
65. Rps4x ENSMUSG00000031320 105.93 1100.58 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Ywhae ENSMUSG00000020849 104.78 1088.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
67. Meg3 ENSMUSG00000021268 100.20 1041.05 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
68. Actc1 ENSMUSG00000068614 99.06 1029.20 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.06 1029.20 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Hnrnpa2b1 ENSMUSG00000004980 97.91 1017.25 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
71. Rplp1 ENSMUSG00000007892 96.77 1005.41 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Gm14303 ENSMUSG00000081344 96.20 999.49 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
73. Gm10800 ENSMUSG00000075014 95.05 987.54 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
74. Paics ENSMUSG00000029247 95.05 987.54 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
75. Marcks ENSMUSG00000069662 92.76 963.75 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
76. Rrm2 ENSMUSG00000020649 92.19 957.83 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
77. Cdk4 ENSMUSG00000006728 91.62 951.90 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
78. Rps5 ENSMUSG00000012848 90.47 939.96 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
79. Tpm4 ENSMUSG00000031799 89.32 928.01 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
80. Rpl18a ENSMUSG00000045128 88.18 916.16 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
81. Ngfrap1 85.89 892.37 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
82. Cox8a ENSMUSG00000035885 85.32 886.45 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
83. Ddx5 ENSMUSG00000020719 85.32 886.45 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
84. Pabpc1 ENSMUSG00000022283 85.32 886.45 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
85. Hnrnpa0 ENSMUSG00000007836 84.74 880.42 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
86. Anp32b ENSMUSG00000028333 84.17 874.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
87. Igfbp4 ENSMUSG00000017493 84.17 874.50 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
88. Sub1 ENSMUSG00000022205 84.17 874.50 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
89. Tpm1 ENSMUSG00000032366 83.60 868.58 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
90. H3f3b ENSMUSG00000016559 83.03 862.66 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
91. Serbp1 ENSMUSG00000036371 83.03 862.66 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
92. Tmsb10 ENSMUSG00000079523 83.03 862.66 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
93. Wbp5 83.03 862.66 WW domain binding protein 5
94. Ndufa12 ENSMUSG00000020022 82.45 856.63 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
95. Prdx1 ENSMUSG00000028691 82.45 856.63 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
96. Marcksl1 ENSMUSG00000047945 81.88 850.71 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
97. Col1a1 ENSMUSG00000001506 79.59 826.92 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
98. Hnrnpk ENSMUSG00000021546 79.59 826.92 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
99. Hnrnph1 ENSMUSG00000007850 79.02 820.99 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
100. Eef2 ENSMUSG00000034994 78.45 815.07 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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