Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s44.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3745.36 38910.56 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2977.61 30934.40 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2424.45 25187.62 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2415.55 25095.16 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2382.20 24748.68 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2377.19 24696.63 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1368.72 14219.64 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 952.88 9899.47 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 797.77 8288.03 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 764.97 7947.28 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 745.51 7745.11 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Mdk ENSMUSG00000027239 743.85 7727.86 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Igf2 ENSMUSG00000048583 653.23 6786.41 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Eef1a1 ENSMUSG00000037742 637.66 6624.65 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Nd2 ENSMUSG00000064345 554.27 5758.31 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. mt-Rnr2 ENSMUSG00000064339 410.84 4268.22 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Hbb-y ENSMUSG00000052187 379.15 3938.99 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 363.03 3771.52 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Npm1 ENSMUSG00000057113 284.08 2951.31 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Tuba1b ENSMUSG00000023004 276.30 2870.48 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Hmga2 ENSMUSG00000056758 262.96 2731.89 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Cdkn1c ENSMUSG00000037664 254.06 2639.43 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
23. Ubb ENSMUSG00000019505 235.72 2448.90 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
24. Nedd4 ENSMUSG00000032216 235.16 2443.08 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tubb5 ENSMUSG00000001525 235.16 2443.08 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Tpt1 ENSMUSG00000060126 232.38 2414.20 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Cfl1 ENSMUSG00000056201 231.83 2408.48 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. mt-Nd5 ENSMUSG00000064367 227.38 2362.25 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
29. Rpsa ENSMUSG00000032518 221.82 2304.49 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
30. Hsp90ab1 ENSMUSG00000023944 208.48 2165.90 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Hba-a1 ENSMUSG00000069919 206.25 2142.73 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Pkm ENSMUSG00000032294 199.58 2073.44 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Hba-x ENSMUSG00000055609 193.47 2009.96 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
34. Gm10800 ENSMUSG00000075014 190.13 1975.26 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
35. Eif4g2 ENSMUSG00000005610 177.34 1842.39 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Chchd2 ENSMUSG00000070493 173.45 1801.97 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Pbx1 ENSMUSG00000052534 172.90 1796.26 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
38. Col3a1 ENSMUSG00000026043 161.78 1680.73 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
39. Hnrnpc ENSMUSG00000060373 158.44 1646.03 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Atp5g3 ENSMUSG00000018770 156.22 1622.97 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Ybx1 ENSMUSG00000028639 155.11 1611.44 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
42. Fkbp1a ENSMUSG00000032966 143.99 1495.91 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
43. Rps20 ENSMUSG00000028234 142.32 1478.56 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Acta2 ENSMUSG00000035783 140.65 1461.21 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
45. Grb10 ENSMUSG00000020176 140.65 1461.21 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
46. Eef1b2 ENSMUSG00000025967 140.10 1455.50 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Rpl4 ENSMUSG00000032399 136.21 1415.09 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Tmsb4x ENSMUSG00000049775 135.65 1409.27 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
49. Hsp90aa1 ENSMUSG00000021270 135.09 1403.45 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Rpl23 ENSMUSG00000071415 134.54 1397.74 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
51. Eif5a ENSMUSG00000078812 133.98 1391.92 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Ran ENSMUSG00000029430 133.43 1386.20 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Peg3 ENSMUSG00000002265 132.31 1374.57 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
54. Banf1 ENSMUSG00000024844 129.53 1345.69 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Rps26 ENSMUSG00000025362 122.86 1276.39 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Set ENSMUSG00000054766 122.86 1276.39 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Myl6 ENSMUSG00000090841 121.19 1259.04 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
58. Ywhab ENSMUSG00000018326 119.53 1241.80 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Meg3 ENSMUSG00000021268 118.97 1235.98 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
60. Hmgn1 ENSMUSG00000040681 116.19 1207.10 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
61. Actc1 ENSMUSG00000068614 113.41 1178.22 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
62. Hbb-bh1 ENSMUSG00000052217 110.08 1143.62 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
63. Ywhae ENSMUSG00000020849 107.30 1114.74 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
64. Pcbp1 ENSMUSG00000051695 106.18 1103.10 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Rplp1 ENSMUSG00000007892 106.18 1103.10 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Gm5805 ENSMUSG00000061848 105.07 1091.57 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Paics ENSMUSG00000029247 102.29 1062.69 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 102.29 1062.69 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
69. Trim28 ENSMUSG00000005566 101.74 1056.98 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
70. Rps4x ENSMUSG00000031320 101.18 1051.16 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Rrm2 ENSMUSG00000020649 100.62 1045.34 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
72. Tmsb10 ENSMUSG00000079523 98.96 1028.10 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
73. Tpm4 ENSMUSG00000031799 98.96 1028.10 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
74. Rps5 ENSMUSG00000012848 98.40 1022.28 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Morf4l1 ENSMUSG00000062270 96.73 1004.93 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
76. Pabpc1 ENSMUSG00000022283 93.95 976.05 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
77. Rpl18a ENSMUSG00000045128 93.95 976.05 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
78. Hnrnpa2b1 ENSMUSG00000004980 93.40 970.33 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
79. Col1a1 ENSMUSG00000001506 92.84 964.52 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
80. Crabp1 ENSMUSG00000032291 92.84 964.52 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
81. Ddx5 ENSMUSG00000020719 92.84 964.52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
82. Rpl32 ENSMUSG00000057841 92.84 964.52 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
83. Cdk4 ENSMUSG00000006728 91.73 952.98 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
84. Gm14303 ENSMUSG00000081344 91.73 952.98 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
85. Ngfrap1 90.62 941.45 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
86. Rps3a1 ENSMUSG00000028081 88.95 924.10 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
87. U2af2 ENSMUSG00000030435 87.28 906.75 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
88. Hnrnpa0 ENSMUSG00000007836 86.17 895.22 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
89. Rps9 ENSMUSG00000006333 86.17 895.22 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
90. Tmpo ENSMUSG00000019961 85.61 889.40 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
91. Wbp5 85.06 883.69 WW domain binding protein 5
92. Marcksl1 ENSMUSG00000047945 83.95 872.16 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
93. Rpl37 ENSMUSG00000041841 83.95 872.16 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
94. Eef2 ENSMUSG00000034994 82.83 860.52 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
95. Lamp1 ENSMUSG00000031447 81.72 848.99 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
96. Tsc22d1 ENSMUSG00000022010 81.72 848.99 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
97. Ago2 ENSMUSG00000036698 81.17 843.28 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
98. Hnrnph1 ENSMUSG00000007850 81.17 843.28 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
99. Ndufa12 ENSMUSG00000020022 81.17 843.28 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
100. Rpl26 ENSMUSG00000060938 81.17 843.28 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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