Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s42.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3449.02 35838.54 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3009.43 31270.79 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2559.74 26598.09 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2445.88 25414.98 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2276.53 23655.27 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2229.69 23168.56 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1294.28 13448.78 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1201.32 12482.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Igf2 ENSMUSG00000048583 830.19 8626.45 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
10. mt-Co3 ENSMUSG00000064358 819.38 8514.12 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Nd3 ENSMUSG00000064360 786.95 8177.15 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Mdk ENSMUSG00000027239 756.68 7862.61 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Eef1a1 ENSMUSG00000037742 677.41 7038.92 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 600.30 6237.68 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Rnr2 ENSMUSG00000064339 574.36 5968.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. mt-Nd2 ENSMUSG00000064345 496.53 5159.41 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Gm13340 ENSMUSG00000083563 360.32 3744.06 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hbb-y ENSMUSG00000052187 358.88 3729.10 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Cfl1 ENSMUSG00000056201 268.08 2785.60 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Npm1 ENSMUSG00000057113 263.04 2733.23 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Cdkn1c ENSMUSG00000037664 250.79 2605.94 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
22. Gm10800 ENSMUSG00000075014 250.79 2605.94 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Tuba1b ENSMUSG00000023004 247.90 2575.91 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Ubb ENSMUSG00000019505 239.26 2486.13 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Nedd4 ENSMUSG00000032216 229.17 2381.29 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. mt-Nd5 ENSMUSG00000064367 229.17 2381.29 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Tpt1 ENSMUSG00000060126 228.45 2373.81 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Rpsa ENSMUSG00000032518 227.72 2366.22 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Pbx1 ENSMUSG00000052534 213.31 2216.49 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
30. Tubb5 ENSMUSG00000001525 211.87 2201.53 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Eif4g2 ENSMUSG00000005610 193.85 2014.28 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Hsp90ab1 ENSMUSG00000023944 192.41 1999.32 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Hmga2 ENSMUSG00000056758 190.97 1984.36 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
34. Pkm ENSMUSG00000032294 190.97 1984.36 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Hba-a1 ENSMUSG00000069919 170.79 1774.67 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
36. Hba-x ENSMUSG00000055609 168.63 1752.22 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
37. Atp5g3 ENSMUSG00000018770 166.47 1729.78 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Chchd2 ENSMUSG00000070493 165.75 1722.30 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Acta2 ENSMUSG00000035783 158.54 1647.38 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
40. Rps26 ENSMUSG00000025362 157.10 1632.42 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Grb10 ENSMUSG00000020176 148.45 1542.53 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Rpl4 ENSMUSG00000032399 144.85 1505.13 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Rpl23 ENSMUSG00000071415 144.13 1497.65 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
44. Fkbp1a ENSMUSG00000032966 141.25 1467.72 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. Col3a1 ENSMUSG00000026043 139.81 1452.76 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
46. Ybx1 ENSMUSG00000028639 139.09 1445.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Hnrnpc ENSMUSG00000060373 134.04 1392.80 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Eef1b2 ENSMUSG00000025967 133.32 1385.32 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Actc1 ENSMUSG00000068614 131.88 1370.36 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
50. Hsp90aa1 ENSMUSG00000021270 128.28 1332.95 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Ran ENSMUSG00000029430 127.55 1325.36 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
52. Rps20 ENSMUSG00000028234 127.55 1325.36 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Banf1 ENSMUSG00000024844 126.83 1317.88 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Rps4x ENSMUSG00000031320 126.11 1310.40 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Pcbp1 ENSMUSG00000051695 124.67 1295.44 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
56. Ywhab ENSMUSG00000018326 123.23 1280.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Tmsb4x ENSMUSG00000049775 120.35 1250.55 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
58. Set ENSMUSG00000054766 118.91 1235.59 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
59. Myl6 ENSMUSG00000090841 117.47 1220.62 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. Crabp1 ENSMUSG00000032291 113.14 1175.63 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
61. Eif5a ENSMUSG00000078812 113.14 1175.63 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
62. Hmgn1 ENSMUSG00000040681 112.42 1168.15 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Rps3a1 ENSMUSG00000028081 112.42 1168.15 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
64. Wbp5 110.98 1153.19 WW domain binding protein 5
65. Rrm2 ENSMUSG00000020649 109.54 1138.22 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
66. Cdk4 ENSMUSG00000006728 108.82 1130.74 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Morf4l1 ENSMUSG00000062270 108.10 1123.26 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
68. Peg3 ENSMUSG00000002265 107.38 1115.78 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
69. Paics ENSMUSG00000029247 106.66 1108.30 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
70. Tmsb10 ENSMUSG00000079523 106.66 1108.30 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
71. Trim28 ENSMUSG00000005566 106.66 1108.30 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
72. U2af2 ENSMUSG00000030435 104.49 1085.75 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
73. Rps9 ENSMUSG00000006333 103.77 1078.27 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
74. Pabpc1 ENSMUSG00000022283 100.89 1048.34 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Tpm1 ENSMUSG00000032366 100.17 1040.86 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
76. Marcks ENSMUSG00000069662 99.45 1033.38 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
77. Gm5805 ENSMUSG00000061848 98.01 1018.42 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
78. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 96.57 1003.45 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
79. Gm14303 ENSMUSG00000081344 95.85 995.97 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
80. Meg3 ENSMUSG00000021268 95.13 988.49 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
81. Ddx39b ENSMUSG00000019432 93.68 973.42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
82. Rplp1 ENSMUSG00000007892 92.96 965.94 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
83. Ywhae ENSMUSG00000020849 92.24 958.46 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Rpl37 ENSMUSG00000041841 91.52 950.98 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
85. Hnrnpa2b1 ENSMUSG00000004980 90.80 943.50 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
86. Rpl18a ENSMUSG00000045128 90.08 936.02 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
87. Gm9844 ENSMUSG00000091955 87.92 913.57 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
88. Hba-a2 ENSMUSG00000069917 87.92 913.57 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
89. Tecr ENSMUSG00000031708 87.92 913.57 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
90. Ago2 ENSMUSG00000036698 86.48 898.61 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
91. Ngfrap1 86.48 898.61 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
92. Ddx5 ENSMUSG00000020719 85.04 883.65 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
93. Anp32b ENSMUSG00000028333 84.32 876.16 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Rps5 ENSMUSG00000012848 84.32 876.16 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
95. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 83.60 868.68 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
96. Plagl1 ENSMUSG00000019817 83.60 868.68 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
97. Tpm4 ENSMUSG00000031799 82.15 853.62 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
98. Col1a1 ENSMUSG00000001506 79.99 831.17 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
99. Kpnb1 ENSMUSG00000001440 79.27 823.69 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
100. Ndufa12 ENSMUSG00000020022 79.27 823.69 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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