Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s41.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3662.28 38051.60 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2663.91 27678.39 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2471.92 25683.59 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2310.86 24010.15 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2284.19 23733.05 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2225.53 23123.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1326.89 13786.57 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 814.37 8461.42 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. H19 ENSMUSG00000000031 802.11 8334.03 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co3 ENSMUSG00000064358 796.77 8278.55 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Igf2 ENSMUSG00000048583 708.24 7358.71 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
12. Mdk ENSMUSG00000027239 695.44 7225.72 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Eef1a1 ENSMUSG00000037742 635.18 6599.61 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 619.18 6433.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Rnr2 ENSMUSG00000064339 588.78 6117.51 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. mt-Nd2 ENSMUSG00000064345 535.98 5568.91 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Gm13340 ENSMUSG00000083563 377.05 3917.60 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Tuba1b ENSMUSG00000023004 343.46 3568.60 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Hbb-y ENSMUSG00000052187 332.79 3457.73 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Npm1 ENSMUSG00000057113 272.52 2831.52 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Cdkn1c ENSMUSG00000037664 271.46 2820.51 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
22. Tubb5 ENSMUSG00000001525 263.99 2742.89 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Hmga2 ENSMUSG00000056758 262.39 2726.27 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Ubb ENSMUSG00000019505 239.99 2493.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Nedd4 ENSMUSG00000032216 235.73 2449.27 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Cfl1 ENSMUSG00000056201 229.86 2388.28 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Pkm ENSMUSG00000032294 228.26 2371.65 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Tpt1 ENSMUSG00000060126 227.19 2360.54 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. mt-Nd5 ENSMUSG00000064367 225.59 2343.91 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
30. Rpsa ENSMUSG00000032518 204.79 2127.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Chchd2 ENSMUSG00000070493 197.86 2055.79 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Pbx1 ENSMUSG00000052534 197.86 2055.79 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Hba-a1 ENSMUSG00000069919 190.93 1983.79 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
34. Hba-x ENSMUSG00000055609 184.53 1917.29 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
35. Hsp90ab1 ENSMUSG00000023944 184.53 1917.29 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Atp5g3 ENSMUSG00000018770 176.53 1834.17 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Acta2 ENSMUSG00000035783 175.46 1823.05 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
38. Ybx1 ENSMUSG00000028639 173.86 1806.43 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
39. Eif4g2 ENSMUSG00000005610 165.33 1717.80 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Rpl23 ENSMUSG00000071415 160.53 1667.93 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Crabp1 ENSMUSG00000032291 159.46 1656.81 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
42. Grb10 ENSMUSG00000020176 155.73 1618.06 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Hnrnpc ENSMUSG00000060373 154.66 1606.94 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Rpl4 ENSMUSG00000032399 153.06 1590.31 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Rps26 ENSMUSG00000025362 153.06 1590.31 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Eef1b2 ENSMUSG00000025967 148.26 1540.44 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Tmsb4x ENSMUSG00000049775 148.26 1540.44 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
48. Col3a1 ENSMUSG00000026043 147.20 1529.43 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Eif5a ENSMUSG00000078812 146.66 1523.82 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
50. Peg3 ENSMUSG00000002265 139.73 1451.81 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
51. Actc1 ENSMUSG00000068614 139.20 1446.31 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
52. Hsp90aa1 ENSMUSG00000021270 132.26 1374.20 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
53. Ywhab ENSMUSG00000018326 131.20 1363.19 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Banf1 ENSMUSG00000024844 130.66 1357.58 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Rps4x ENSMUSG00000031320 130.66 1357.58 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Ran ENSMUSG00000029430 124.80 1296.69 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Fkbp1a ENSMUSG00000032966 121.60 1263.44 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Hmgn1 ENSMUSG00000040681 120.53 1252.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
59. Myl6 ENSMUSG00000090841 118.93 1235.70 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. U2af2 ENSMUSG00000030435 116.80 1213.57 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
61. Ndufa12 ENSMUSG00000020022 113.06 1174.71 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
62. Rps20 ENSMUSG00000028234 113.06 1174.71 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
63. Marcks ENSMUSG00000069662 112.53 1169.20 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
64. Pcbp1 ENSMUSG00000051695 112.53 1169.20 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Set ENSMUSG00000054766 112.53 1169.20 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
66. Trim28 ENSMUSG00000005566 107.73 1119.33 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Pabpc1 ENSMUSG00000022283 106.66 1108.21 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
68. Meg3 ENSMUSG00000021268 103.46 1074.96 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 101.86 1058.34 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Paics ENSMUSG00000029247 101.33 1052.83 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
71. Wbp5 100.26 1041.72 WW domain binding protein 5
72. Cdk4 ENSMUSG00000006728 99.73 1036.21 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
73. Rps3a1 ENSMUSG00000028081 99.20 1030.70 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
74. Ywhae ENSMUSG00000020849 99.20 1030.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
75. Gm5805 ENSMUSG00000061848 97.60 1014.08 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Tpm4 ENSMUSG00000031799 96.53 1002.96 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
77. Rps9 ENSMUSG00000006333 93.33 969.71 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
78. Sub1 ENSMUSG00000022205 93.33 969.71 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
79. Fscn1 ENSMUSG00000029581 92.80 964.20 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
80. Hbb-bh1 ENSMUSG00000052217 92.80 964.20 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
81. Ngfrap1 91.73 953.09 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
82. Cox8a ENSMUSG00000035885 90.66 941.97 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
83. Gm14303 ENSMUSG00000081344 90.66 941.97 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
84. Gm10800 ENSMUSG00000075014 89.60 930.96 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
85. Hba-a2 ENSMUSG00000069917 89.06 925.35 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
86. Rps5 ENSMUSG00000012848 89.06 925.35 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
87. Rpl18a ENSMUSG00000045128 88.53 919.84 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
88. Tmpo ENSMUSG00000019961 88.53 919.84 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
89. Rpl32 ENSMUSG00000057841 85.86 892.10 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
90. Anp32b ENSMUSG00000028333 85.33 886.59 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
91. Ldha ENSMUSG00000063229 83.73 869.97 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
92. Rpl37 ENSMUSG00000041841 83.20 864.46 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
93. Rpl8 ENSMUSG00000003970 83.20 864.46 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
94. Rplp1 ENSMUSG00000007892 83.20 864.46 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
95. Ddx5 ENSMUSG00000020719 82.66 858.85 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
96. Hnrnpa2b1 ENSMUSG00000004980 82.66 858.85 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
97. Stmn1 ENSMUSG00000028832 82.66 858.85 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
98. Tpm1 ENSMUSG00000032366 82.66 858.85 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
99. Atxn7l3b ENSMUSG00000074748 82.13 853.34 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
100. Marcksl1 ENSMUSG00000047945 82.13 853.34 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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