Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s40.

Sample reads: 96,262. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3116.74 32377.90 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2657.93 27611.60 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2312.81 24026.36 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2220.95 23072.08 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2179.33 22639.72 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2168.17 22523.79 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1276.94 13265.34 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 980.04 10181.03 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Actb ENSMUSG00000029580 794.28 8251.29 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Igf2 ENSMUSG00000048583 713.59 7413.05 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
11. mt-Nd3 ENSMUSG00000064360 669.43 6954.30 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Mdk ENSMUSG00000027239 666.39 6922.72 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Rnr2 ENSMUSG00000064339 658.77 6843.56 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. mt-Co3 ENSMUSG00000064358 646.59 6717.03 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Eef1a1 ENSMUSG00000037742 606.50 6300.56 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Nd2 ENSMUSG00000064345 493.83 5130.10 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hbb-y ENSMUSG00000052187 365.93 3801.42 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Hmga2 ENSMUSG00000056758 349.18 3627.42 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Gm13340 ENSMUSG00000083563 342.58 3558.85 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Cdkn1c ENSMUSG00000037664 280.66 2915.60 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
21. Npm1 ENSMUSG00000057113 256.30 2662.54 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Nedd4 ENSMUSG00000032216 254.78 2646.75 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Ubb ENSMUSG00000019505 245.64 2551.80 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
24. Cfl1 ENSMUSG00000056201 245.14 2546.61 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tuba1b ENSMUSG00000023004 244.12 2536.01 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. mt-Nd5 ENSMUSG00000064367 238.54 2478.05 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Hba-a1 ENSMUSG00000069919 216.72 2251.37 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
28. Hba-x ENSMUSG00000055609 214.18 2224.98 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Hsp90ab1 ENSMUSG00000023944 214.18 2224.98 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Pbx1 ENSMUSG00000052534 214.18 2224.98 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
31. Rpsa ENSMUSG00000032518 211.64 2198.60 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
32. Tpt1 ENSMUSG00000060126 208.09 2161.72 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Tubb5 ENSMUSG00000001525 202.00 2098.45 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Set ENSMUSG00000054766 193.37 2008.80 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Acta2 ENSMUSG00000035783 184.23 1913.85 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
36. Eif4g2 ENSMUSG00000005610 180.17 1871.68 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Pkm ENSMUSG00000032294 168.50 1750.44 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Atp5g3 ENSMUSG00000018770 162.92 1692.48 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Hnrnpc ENSMUSG00000060373 160.89 1671.39 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Peg3 ENSMUSG00000002265 159.36 1655.49 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
41. Actc1 ENSMUSG00000068614 157.84 1639.70 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
42. Col3a1 ENSMUSG00000026043 156.83 1629.21 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
43. Crabp1 ENSMUSG00000032291 153.27 1592.23 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
44. Ybx1 ENSMUSG00000028639 152.77 1587.03 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Fkbp1a ENSMUSG00000032966 151.24 1571.14 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Chchd2 ENSMUSG00000070493 143.63 1492.08 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Ywhab ENSMUSG00000018326 140.08 1455.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
48. Rps26 ENSMUSG00000025362 138.56 1439.41 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Eif5a ENSMUSG00000078812 135.00 1402.43 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
50. Grb10 ENSMUSG00000020176 135.00 1402.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
51. Hsp90aa1 ENSMUSG00000021270 135.00 1402.43 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Meg3 ENSMUSG00000021268 134.50 1397.24 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
53. Pcbp1 ENSMUSG00000051695 130.94 1360.26 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Rps20 ENSMUSG00000028234 130.44 1355.06 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Rpl4 ENSMUSG00000032399 129.42 1344.46 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
56. Eef1b2 ENSMUSG00000025967 127.90 1328.67 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Banf1 ENSMUSG00000024844 121.81 1265.41 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Tmsb4x ENSMUSG00000049775 118.25 1228.43 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
59. Ran ENSMUSG00000029430 117.24 1217.93 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
60. Rpl23 ENSMUSG00000071415 116.22 1207.34 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
61. Trim28 ENSMUSG00000005566 113.18 1175.76 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. Rrm2 ENSMUSG00000020649 112.67 1170.46 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. Myl6 ENSMUSG00000090841 111.15 1154.67 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
64. Pabpc1 ENSMUSG00000022283 109.63 1138.88 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
65. Marcks ENSMUSG00000069662 109.12 1133.58 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
66. Hmgn1 ENSMUSG00000040681 108.10 1122.98 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
67. Ago2 ENSMUSG00000036698 105.06 1091.40 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
68. U2af2 ENSMUSG00000030435 102.52 1065.02 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 101.51 1054.52 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Rps4x ENSMUSG00000031320 98.97 1028.14 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Hbb-bh1 ENSMUSG00000052217 98.46 1022.84 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
72. Ywhae ENSMUSG00000020849 95.42 991.26 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
73. Tmsb10 ENSMUSG00000079523 94.91 985.96 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
74. Morf4l1 ENSMUSG00000062270 94.40 980.66 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
75. Paics ENSMUSG00000029247 94.40 980.66 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Malat1 ENSMUSG00000092341 93.89 975.37 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
77. H3f3b ENSMUSG00000016559 93.39 970.17 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
78. Gm5805 ENSMUSG00000061848 91.86 954.28 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
79. Hnrnph1 ENSMUSG00000007850 91.36 949.08 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
80. Gm14303 ENSMUSG00000081344 90.85 943.78 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Wbp5 90.85 943.78 WW domain binding protein 5
82. Anp32b ENSMUSG00000028333 89.83 933.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
83. Fscn1 ENSMUSG00000029581 88.82 922.70 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
84. Hba-a2 ENSMUSG00000069917 87.80 912.10 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
85. Rps3a1 ENSMUSG00000028081 86.28 896.31 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
86. Rpl8 ENSMUSG00000003970 85.27 885.82 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
87. Rps5 ENSMUSG00000012848 85.27 885.82 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
88. Ddx5 ENSMUSG00000020719 84.76 880.52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Rplp1 ENSMUSG00000007892 84.76 880.52 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
90. Tsc22d1 ENSMUSG00000022010 84.76 880.52 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
91. Plagl1 ENSMUSG00000019817 84.25 875.22 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
92. Cdk4 ENSMUSG00000006728 83.23 864.63 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
93. Gm9844 ENSMUSG00000091955 83.23 864.63 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
94. Tuba1a ENSMUSG00000072235 83.23 864.63 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
95. Col1a2 ENSMUSG00000029661 82.73 859.43 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
96. Srsf3 ENSMUSG00000071172 82.22 854.13 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
97. Marcksl1 ENSMUSG00000047945 81.71 848.83 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
98. Kpnb1 ENSMUSG00000001440 81.20 843.54 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 80.70 838.34 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
100. Hnrnpk ENSMUSG00000021546 80.19 833.04 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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